Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47340 * 2 1 4 4 C 1.50699 * 109.47222 * 119.99784 * 2 1 3 5 5 H 1.08000 * 119.99989 * 119.99829 * 4 2 1 6 6 C 1.37875 * 120.00001 * 300.00360 * 4 2 1 7 7 N 1.31515 * 119.99965 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00045 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47280 * 89.99891 * 8 6 4 10 10 H 1.48505 * 109.47533 * 210.00076 * 8 6 4 11 11 H 1.48503 * 109.47353 * 330.00290 * 8 6 4 12 12 N 1.46898 * 109.47544 * 239.99981 * 2 1 3 13 13 C 1.48110 * 111.00489 * 172.76747 * 12 2 1 14 14 C 1.53208 * 86.06369 * 222.96841 * 13 12 2 15 15 C 1.52626 * 120.92531 * 258.51895 * 14 13 12 16 16 C 1.53508 * 80.99807 * 207.53007 * 15 14 13 17 17 O 1.42499 * 121.07485 * 148.20202 * 14 13 12 18 18 C 1.48347 * 111.07881 * 73.29392 * 12 2 1 19 19 H 1.08999 * 109.46951 * 185.93493 * 1 2 3 20 20 H 1.08994 * 109.47259 * 305.94257 * 1 2 3 21 21 H 1.09009 * 109.46737 * 65.94285 * 1 2 3 22 22 H 0.97004 * 119.99626 * 180.02562 * 7 6 4 23 23 H 1.09000 * 113.79699 * 108.65159 * 13 12 2 24 24 H 1.09003 * 113.79593 * 337.28040 * 13 12 2 25 25 H 1.08998 * 114.61196 * 320.55399 * 15 14 13 26 26 H 1.08997 * 114.60958 * 94.50891 * 15 14 13 27 27 H 1.09001 * 113.34819 * 270.75658 * 16 15 14 28 28 H 1.09000 * 113.34934 * 140.68106 * 16 15 14 29 29 H 1.08996 * 113.69604 * 22.70918 * 18 12 2 30 30 H 1.09004 * 113.98090 * 251.26254 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3213 -1.1202 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3430 -0.9492 5.1121 11 1 2.4859 -2.5661 3.7120 12 7 2.0197 -0.6925 -1.1994 13 6 3.4899 -0.5633 -1.3238 14 6 3.2350 -0.3015 -2.8117 15 6 3.4513 -1.3994 -3.8496 16 6 3.7080 -0.1746 -4.7386 17 8 4.0876 0.5575 -3.5640 18 6 1.8225 0.1379 -2.4128 19 1 -0.3633 -1.0222 0.1063 20 1 -0.3633 0.6032 0.8320 21 1 -0.3633 0.4190 -0.9385 22 1 0.7094 1.1618 3.4844 23 1 4.0310 -1.4887 -1.1264 24 1 3.9029 0.2932 -0.7909 25 1 4.3270 -2.0241 -3.6738 26 1 2.5556 -1.9656 -4.1048 27 1 2.8062 0.2102 -5.2149 28 1 4.5276 -0.3162 -5.4430 29 1 1.7360 1.2042 -2.2045 30 1 1.0426 -0.2302 -3.0795 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306538787.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = 6.225150 kcal Electronic energy + Delta-G solvation = -12877.141766 eV Core-core repulsion = 10674.229219 eV Total energy + Delta-G solvation = -2202.912547 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.38684 -39.06143 -35.35608 -32.24102 -30.54526 -27.96396 -26.97436 -26.44931 -23.56207 -21.70331 -19.83806 -18.58185 -17.56399 -17.10007 -16.84902 -16.31757 -15.79206 -14.97524 -14.58565 -14.14936 -13.77001 -13.43222 -13.16335 -12.85690 -12.70873 -12.59864 -12.34725 -12.12565 -12.03657 -11.76015 -11.11730 -10.90786 -10.61882 -10.55564 -9.59818 -8.16409 -6.29004 1.39945 1.40622 1.51914 2.39097 2.84147 3.12551 3.19196 3.28844 3.44235 3.99843 4.30263 4.41167 4.51080 4.61923 4.66454 4.75219 4.77573 4.90715 4.91475 4.94369 5.07996 5.16611 5.34801 5.37643 5.41065 5.65490 6.00581 6.20614 6.44380 6.82440 7.40059 8.90352 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.061627 B = 0.009333 C = 0.008688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.234918 B = 2999.356738 C = 3222.222850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.186 3.814 3 H -0.031 1.031 4 C -0.524 4.524 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.267 1.267 12 N -0.474 5.474 13 C 0.022 3.978 14 C 0.053 3.947 15 C -0.138 4.138 16 C 0.029 3.971 17 O -0.391 6.391 18 C 0.002 3.998 19 H 0.032 0.968 20 H 0.057 0.943 21 H 0.030 0.970 22 H 0.263 0.737 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 -3.668 -11.841 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 H -0.013 1.013 4 C -0.562 4.562 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.192 1.192 12 N -0.198 5.198 13 C -0.108 4.108 14 C 0.012 3.988 15 C -0.175 4.175 16 C -0.047 4.047 17 O -0.310 6.310 18 C -0.127 4.127 19 H 0.051 0.949 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.111 0.889 24 H 0.063 0.937 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.150 -3.960 -11.590 12.646 hybrid contribution 0.387 0.844 1.281 1.582 sum 3.537 -3.116 -10.309 11.335 Atomic orbital electron populations 1.21521 0.96809 0.99829 0.99120 1.19582 0.93480 0.90578 0.88517 1.01328 1.21312 1.31443 1.12440 0.91010 0.92628 1.25760 0.95233 0.95761 1.02078 1.70031 1.37608 1.24113 1.24229 0.85477 0.78008 0.79076 0.78615 1.20212 1.20564 1.19174 1.68515 1.06771 1.41954 1.02575 1.23759 0.92278 1.00998 0.93719 1.24028 0.90706 0.91088 0.92942 1.23932 1.04574 0.96659 0.92379 1.23786 1.02037 0.89411 0.89462 1.89775 1.62366 1.57195 1.21631 1.24180 0.96884 0.97042 0.94589 0.94873 0.92373 0.95111 0.92796 0.88860 0.93660 0.87057 0.88184 0.88972 0.87246 0.92828 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.05 71.98 0.65 -5.12 16 2 C 0.19 9.84 1.65 44.17 0.07 9.91 16 3 H -0.03 -1.82 7.70 -2.39 -0.02 -1.84 16 4 C -0.52 -29.75 8.21 25.60 0.21 -29.54 16 5 H 0.06 3.14 7.71 -2.91 -0.02 3.12 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.07 11.39 21.45 0.24 -53.83 16 8 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.47 -20.96 5.97 -902.85 -5.39 -26.35 16 13 C 0.02 0.88 7.16 86.14 0.62 1.50 16 14 C 0.05 1.76 1.73 -20.13 -0.03 1.73 16 15 C -0.14 -3.24 8.41 30.64 0.26 -2.99 16 16 C 0.03 0.63 8.73 62.77 0.55 1.18 16 17 O -0.39 -12.97 12.75 -148.98 -1.90 -14.87 16 18 C 0.00 0.08 7.05 86.09 0.61 0.69 16 19 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.06 3.20 6.25 -2.39 -0.01 3.18 16 21 H 0.03 1.34 7.50 -2.38 -0.02 1.33 16 22 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 23 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 24 H 0.05 2.08 7.84 -2.39 -0.02 2.06 16 25 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 2.14 7.74 -2.39 -0.02 2.12 16 30 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 Total: -1.00 -64.36 248.31 -0.54 -64.90 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.10 Total: 5.30 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.38 Total: -21.59 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -5.15 Total: -80.18 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.90 Total: -14.87 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -64.36 -0.54 -64.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306538787.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.123 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds