Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00351 * 2 1 4 4 C 1.53002 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.51525 * 330.42335 * 4 3 2 6 6 C 1.52997 * 117.43742 * 115.76128 * 4 3 2 7 7 H 1.09002 * 119.54698 * 355.88569 * 6 4 3 8 8 C 1.54393 * 118.12137 * 199.19595 * 6 4 3 9 9 N 1.48151 * 104.61391 * 272.81045 * 8 6 4 10 10 C 1.36942 * 127.83674 * 219.60049 * 9 8 6 11 11 H 1.07999 * 119.99675 * 15.57594 * 10 9 8 12 12 C 1.38805 * 119.99965 * 195.57191 * 10 9 8 13 13 N 1.31624 * 120.00317 * 9.09702 * 12 10 9 14 14 Si 1.86797 * 120.00197 * 189.09982 * 12 10 9 15 15 H 1.48500 * 109.47297 * 59.99731 * 14 12 10 16 16 H 1.48500 * 109.47467 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47231 * 300.00233 * 14 12 10 18 18 C 1.48147 * 104.32532 * 39.58494 * 9 8 6 19 19 C 1.52994 * 117.44413 * 185.00092 * 4 3 2 20 20 H 1.09004 * 119.53882 * 4.12243 * 19 4 3 21 21 H 1.09004 * 109.46822 * 59.99503 * 1 2 3 22 22 H 1.09004 * 109.46899 * 299.99893 * 1 2 3 23 23 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47428 * 300.00533 * 3 2 1 25 25 H 1.09002 * 109.46624 * 60.00404 * 3 2 1 26 26 H 1.08997 * 110.40808 * 31.58769 * 8 6 4 27 27 H 1.09001 * 110.41258 * 153.91120 * 8 6 4 28 28 H 0.96996 * 120.00165 * 179.97438 * 13 12 10 29 29 H 1.08994 * 110.40665 * 201.62844 * 18 9 8 30 30 H 1.09005 * 110.40602 * 79.19787 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.9358 0.2948 0.4865 6 6 4.2854 1.7170 -1.2221 7 1 3.7224 2.0980 -2.0741 8 6 5.7275 1.2214 -1.4640 9 7 6.5776 2.1489 -0.6816 10 6 7.7902 2.6778 -1.0355 11 1 8.1170 2.6383 -2.0641 12 6 8.5991 3.2647 -0.0723 13 7 8.2891 3.1566 1.2024 14 14 10.1277 4.2081 -0.5848 15 1 9.7394 5.3394 -1.4649 16 1 10.8132 4.7339 0.6231 17 1 11.0456 3.3015 -1.3201 18 6 5.8182 2.3746 0.5702 19 6 4.3453 2.4772 0.1191 20 1 3.8266 3.4246 0.2662 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6887 1.8464 -0.8899 25 1 1.6887 1.8462 0.8901 26 1 5.8446 0.2005 -1.1005 27 1 5.9761 1.2777 -2.5238 28 1 8.8546 3.5664 1.8755 29 1 6.1358 3.3027 1.0452 30 1 5.9494 1.5337 1.2512 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306558032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = 11.132334 kcal Electronic energy + Delta-G solvation = -12448.437249 eV Core-core repulsion = 10245.737493 eV Total energy + Delta-G solvation = -2202.699756 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93690 -37.32904 -33.62450 -30.94995 -28.04070 -27.05251 -26.02532 -24.43165 -21.04017 -19.80565 -19.21223 -16.78191 -16.22900 -15.63856 -15.41164 -14.63830 -13.85071 -13.51030 -12.86089 -12.60841 -12.51076 -11.86559 -11.33742 -11.14676 -11.04462 -10.78170 -10.51999 -10.23649 -10.10160 -9.75098 -9.67596 -9.14989 -8.97176 -8.59645 -6.81783 -5.75782 -3.09854 3.41099 3.45415 3.46911 3.75921 4.28911 4.51076 5.11810 5.25153 5.32038 5.38740 5.43445 5.52903 5.57288 5.60447 5.74418 5.92640 6.01771 6.02673 6.27853 6.61655 6.75777 6.80669 7.00139 7.27342 7.41980 7.57682 7.75237 8.25373 9.15144 9.77928 10.56180 11.38716 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.105151 B = 0.007170 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.219160 B = 3903.966430 C = 4035.533653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.097 3.903 4 C -0.133 4.133 5 H 0.106 0.894 6 C -0.171 4.171 7 H 0.100 0.900 8 C 0.154 3.846 9 N -0.595 5.595 10 C -0.227 4.227 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.917 5.917 14 Si 0.913 3.087 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.184 3.816 19 C -0.166 4.166 20 H 0.100 0.900 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.049 0.951 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.269 -2.518 -1.969 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.021 3.979 4 C -0.152 4.152 5 H 0.124 0.876 6 C -0.191 4.191 7 H 0.118 0.882 8 C 0.027 3.973 9 N -0.319 5.319 10 C -0.355 4.355 11 H 0.094 0.906 12 C -0.203 4.203 13 N -0.563 5.563 14 Si 0.743 3.257 15 H -0.211 1.211 16 H -0.215 1.215 17 H -0.210 1.210 18 C 0.059 3.941 19 C -0.186 4.186 20 H 0.118 0.882 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.889 -2.550 -1.881 12.304 hybrid contribution 0.436 0.765 -0.238 0.912 sum -11.452 -1.786 -2.118 11.783 Atomic orbital electron populations 1.22702 0.81637 1.02425 0.99713 1.87904 1.19087 1.28465 1.95344 1.22027 0.92296 0.83974 0.99649 1.22231 0.90838 0.99399 1.02726 0.87612 1.23965 0.98579 1.05248 0.91345 0.88151 1.21143 0.87302 0.92916 0.95900 1.45209 1.19122 1.50693 1.16864 1.18968 0.92036 1.31297 0.93173 0.90630 1.24893 0.98403 1.01896 0.95132 1.69894 1.39594 1.47884 0.98964 0.86186 0.82487 0.79861 0.77140 1.21115 1.21546 1.20987 1.21056 0.83082 1.01401 0.88593 1.24251 0.99255 0.93725 1.01394 0.88177 0.94344 0.94291 0.89870 0.93480 0.93093 0.95669 0.93226 0.93530 0.89212 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.79 10.70 -35.23 -0.38 -6.17 16 3 C 0.10 1.42 6.22 37.16 0.23 1.65 16 4 C -0.13 -2.36 5.60 -90.62 -0.51 -2.87 16 5 H 0.11 2.01 8.14 -51.93 -0.42 1.58 16 6 C -0.17 -3.29 6.74 -89.22 -0.60 -3.89 16 7 H 0.10 1.74 8.12 -51.93 -0.42 1.32 16 8 C 0.15 3.42 7.04 -2.40 -0.02 3.40 16 9 N -0.60 -15.86 3.38 -168.85 -0.57 -16.43 16 10 C -0.23 -6.47 10.35 -15.06 -0.16 -6.63 16 11 H 0.08 2.08 7.85 -52.49 -0.41 1.66 16 12 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 13 N -0.92 -27.34 10.87 55.49 0.60 -26.74 16 14 Si 0.91 22.20 29.56 -169.99 -5.03 17.18 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 C 0.18 4.60 5.70 -2.41 -0.01 4.59 16 19 C -0.17 -3.32 6.85 -89.22 -0.61 -3.93 16 20 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 21 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.64 7.94 -51.93 -0.41 0.22 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.09 2.47 6.51 -51.93 -0.34 2.13 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 252.75 15.07 3.81 3.81 Total: -1.00 -30.83 252.75 -6.74 -37.58 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -4.52 Total: -2.71 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.66 Total: -6.51 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.03 Total: -43.17 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.38 Total: -6.17 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.83 -6.74 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306558032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.709 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds