Wall clock time and date at job start Mon Mar 30 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00351 * 2 1 4 4 C 1.53002 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.08990 * 115.51525 * 330.42335 * 4 3 2 6 6 C 1.52997 * 117.43742 * 115.76128 * 4 3 2 7 7 H 1.09002 * 119.54698 * 355.88569 * 6 4 3 8 8 C 1.54393 * 118.12137 * 199.19595 * 6 4 3 9 9 N 1.48151 * 104.61391 * 272.81045 * 8 6 4 10 10 C 1.36942 * 127.83674 * 219.60049 * 9 8 6 11 11 H 1.07999 * 119.99675 * 15.57594 * 10 9 8 12 12 C 1.38805 * 119.99965 * 195.57191 * 10 9 8 13 13 N 1.31624 * 120.00317 * 9.09702 * 12 10 9 14 14 Si 1.86797 * 120.00197 * 189.09982 * 12 10 9 15 15 H 1.48500 * 109.47297 * 59.99731 * 14 12 10 16 16 H 1.48500 * 109.47467 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47231 * 300.00233 * 14 12 10 18 18 C 1.48147 * 104.32532 * 39.58494 * 9 8 6 19 19 C 1.52994 * 117.44413 * 185.00092 * 4 3 2 20 20 H 1.09004 * 119.53882 * 4.12243 * 19 4 3 21 21 H 1.09004 * 109.46822 * 59.99503 * 1 2 3 22 22 H 1.09004 * 109.46899 * 299.99893 * 1 2 3 23 23 H 1.09000 * 109.47309 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47428 * 300.00533 * 3 2 1 25 25 H 1.09002 * 109.46624 * 60.00404 * 3 2 1 26 26 H 1.08997 * 110.40808 * 31.58769 * 8 6 4 27 27 H 1.09001 * 110.41258 * 153.91120 * 8 6 4 28 28 H 0.96996 * 120.00165 * 179.97438 * 13 12 10 29 29 H 1.08994 * 110.40665 * 201.62844 * 18 9 8 30 30 H 1.09005 * 110.40602 * 79.19787 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 1 3.9358 0.2948 0.4865 6 6 4.2854 1.7170 -1.2221 7 1 3.7224 2.0980 -2.0741 8 6 5.7275 1.2214 -1.4640 9 7 6.5776 2.1489 -0.6816 10 6 7.7902 2.6778 -1.0355 11 1 8.1170 2.6383 -2.0641 12 6 8.5991 3.2647 -0.0723 13 7 8.2891 3.1566 1.2024 14 14 10.1277 4.2081 -0.5848 15 1 9.7394 5.3394 -1.4649 16 1 10.8132 4.7339 0.6231 17 1 11.0456 3.3015 -1.3201 18 6 5.8182 2.3746 0.5702 19 6 4.3453 2.4772 0.1191 20 1 3.8266 3.4246 0.2662 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6887 1.8464 -0.8899 25 1 1.6887 1.8462 0.8901 26 1 5.8446 0.2005 -1.1005 27 1 5.9761 1.2777 -2.5238 28 1 8.8546 3.5664 1.8755 29 1 6.1358 3.3027 1.0452 30 1 5.9494 1.5337 1.2512 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306558032.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:35 Heat of formation + Delta-G solvation = -8.770157 kcal Electronic energy + Delta-G solvation = -12449.300285 eV Core-core repulsion = 10245.737493 eV Total energy + Delta-G solvation = -2203.562793 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51900 -38.48825 -35.54169 -32.90394 -29.42434 -28.87766 -27.43033 -25.91695 -22.87631 -21.36289 -20.87840 -18.84883 -17.33779 -16.89797 -16.64392 -16.48636 -15.51821 -15.13526 -14.65363 -14.27390 -13.70708 -13.37443 -13.15438 -12.83196 -12.66864 -12.40734 -12.16620 -11.99110 -11.83129 -11.76397 -10.98283 -10.79914 -10.61483 -10.35844 -8.92871 -7.92206 -5.29594 1.46338 1.50231 1.56914 2.47552 2.56855 2.91329 3.28667 3.66873 3.82783 3.95594 4.23404 4.31368 4.40074 4.46232 4.54222 4.58192 4.64336 4.72594 4.89004 4.91169 4.99121 5.27118 5.34018 5.42769 5.50855 5.64124 6.16368 6.29228 6.99612 7.66576 8.45990 9.21803 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.105151 B = 0.007170 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 266.219160 B = 3903.966430 C = 4035.533653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.103 3.897 4 C -0.111 4.111 5 H 0.088 0.912 6 C -0.162 4.162 7 H 0.130 0.870 8 C 0.146 3.854 9 N -0.620 5.620 10 C -0.246 4.246 11 H 0.082 0.918 12 C -0.063 4.063 13 N -0.950 5.950 14 Si 0.984 3.016 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.274 1.274 18 C 0.188 3.812 19 C -0.171 4.171 20 H 0.122 0.878 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.251 0.749 29 H 0.057 0.943 30 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -2.188 -3.127 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C 0.027 3.973 4 C -0.130 4.130 5 H 0.106 0.894 6 C -0.182 4.182 7 H 0.148 0.852 8 C 0.021 3.979 9 N -0.345 5.345 10 C -0.374 4.374 11 H 0.099 0.901 12 C -0.256 4.256 13 N -0.598 5.598 14 Si 0.811 3.189 15 H -0.201 1.201 16 H -0.218 1.218 17 H -0.200 1.200 18 C 0.062 3.938 19 C -0.191 4.191 20 H 0.140 0.860 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -13.446 -2.240 -3.061 13.971 hybrid contribution 0.875 0.566 0.132 1.050 sum -12.571 -1.674 -2.929 13.016 Atomic orbital electron populations 1.22947 0.79206 1.03892 1.01023 1.87852 1.21702 1.28489 1.95621 1.21940 0.89498 0.84459 1.01379 1.22199 0.93153 0.97053 1.00600 0.89428 1.23937 0.97196 1.04854 0.92207 0.85235 1.21288 0.88836 0.91895 0.95878 1.45543 1.19406 1.51751 1.17752 1.19394 0.93083 1.31309 0.93632 0.90061 1.25793 1.01708 1.03034 0.95093 1.70102 1.40751 1.48910 0.99996 0.85079 0.78583 0.78541 0.76663 1.20095 1.21824 1.20018 1.20812 0.86503 0.98526 0.87959 1.23954 0.96855 0.96065 1.02242 0.86020 0.92917 0.93028 0.88484 0.91514 0.91514 0.96440 0.92200 0.94016 0.92425 0.98634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -11.23 10.70 -148.98 -1.59 -12.82 16 3 C 0.10 2.68 6.22 71.98 0.45 3.13 16 4 C -0.11 -3.75 5.60 -10.80 -0.06 -3.81 16 5 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 6 C -0.16 -5.91 6.74 -9.89 -0.07 -5.97 16 7 H 0.13 4.00 8.12 -2.39 -0.02 3.98 16 8 C 0.15 6.46 7.04 86.53 0.61 7.07 16 9 N -0.62 -33.61 3.38 -688.13 -2.33 -35.93 16 10 C -0.25 -14.21 10.35 84.03 0.87 -13.34 16 11 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 12 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 13 N -0.95 -58.39 10.87 21.65 0.24 -58.16 16 14 Si 0.98 46.05 29.56 68.60 2.03 48.08 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 C 0.19 9.66 5.70 86.53 0.49 10.15 16 19 C -0.17 -6.68 6.85 -9.89 -0.07 -6.75 16 20 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 21 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.50 7.94 -2.39 -0.02 1.48 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.06 3.30 6.51 -2.39 -0.02 3.29 16 30 H 0.00 -0.24 8.14 -2.38 -0.02 -0.25 16 Total: -1.00 -67.29 252.75 3.37 -63.92 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.10 Total: 5.93 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 3.93 Total: -11.01 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -2.09 Total: -94.09 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.59 Total: -12.82 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.29 3.37 -63.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306558032.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.145 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds