Wall clock time and date at job start Mon Mar 30 2020 02:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.54464 * 2 1 4 4 C 1.54625 * 110.48807 * 237.38742 * 2 1 3 5 5 C 1.54482 * 101.76594 * 266.11928 * 4 2 1 6 6 H 1.09004 * 110.24568 * 93.66371 * 5 4 2 7 7 C 1.52997 * 110.24937 * 215.58188 * 5 4 2 8 8 N 1.46772 * 105.47169 * 334.58417 * 5 4 2 9 9 C 1.46499 * 124.34500 * 197.01423 * 8 5 4 10 10 C 1.50702 * 109.47064 * 90.00284 * 9 8 5 11 11 H 1.08004 * 120.00011 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99892 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00169 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47352 * 59.99721 * 14 12 10 16 16 H 1.48500 * 109.47407 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47220 * 300.00152 * 14 12 10 18 18 C 1.34415 * 111.30087 * 17.01346 * 8 5 4 19 19 O 1.21273 * 124.94203 * 179.62971 * 18 8 5 20 20 H 1.09000 * 109.47256 * 182.61380 * 1 2 3 21 21 H 1.09004 * 109.47218 * 302.61588 * 1 2 3 22 22 H 1.09001 * 109.47338 * 62.60989 * 1 2 3 23 23 H 1.09003 * 110.97561 * 148.00182 * 4 2 1 24 24 H 1.09002 * 111.00336 * 24.24622 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99784 * 7 5 4 26 26 H 1.09001 * 109.46832 * 299.99975 * 7 5 4 27 27 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 28 28 H 1.09003 * 109.46605 * 209.99233 * 9 8 5 29 29 H 1.08993 * 109.47545 * 329.99965 * 9 8 5 30 30 H 0.97002 * 119.99646 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0712 -0.7806 -1.2201 5 6 2.2773 -2.1914 -0.6252 6 1 1.3953 -2.8074 -0.8009 7 6 3.5135 -2.8501 -1.2406 8 7 2.4757 -1.9842 0.8142 9 6 3.0531 -2.9797 1.7207 10 6 4.5482 -2.7997 1.7777 11 1 5.0211 -2.0218 1.1966 12 6 5.3125 -3.6280 2.5719 13 7 4.7366 -4.5749 3.2800 14 14 7.1658 -3.4054 2.6421 15 1 7.4822 -2.0416 3.1373 16 1 7.7511 -4.4136 3.5620 17 1 7.7377 -3.5835 1.2832 18 6 2.0595 -0.7638 1.1938 19 8 2.1028 -0.3368 2.3280 20 1 -0.3634 -1.0266 0.0469 21 1 -0.3634 0.5539 0.8656 22 1 -0.3634 0.4728 -0.9125 23 1 3.0163 -0.3605 -1.5641 24 1 1.3388 -0.8009 -2.0271 25 1 4.3928 -2.2419 -1.0285 26 1 3.3813 -2.9340 -2.3194 27 1 3.6472 -3.8435 -0.8122 28 1 2.6332 -2.8496 2.7181 29 1 2.8213 -3.9805 1.3565 30 1 5.2743 -5.1575 3.8390 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306834364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:11 Heat of formation + Delta-G solvation = -49.144916 kcal Electronic energy + Delta-G solvation = -12959.411443 eV Core-core repulsion = 10754.097869 eV Total energy + Delta-G solvation = -2205.313574 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.84752 -35.91144 -33.79988 -32.17799 -30.37129 -27.68857 -26.03690 -23.58284 -22.53399 -20.32942 -18.42312 -16.62796 -15.62724 -15.42035 -14.68917 -14.28519 -13.62701 -13.18927 -13.02680 -12.51429 -12.29354 -11.96086 -11.74597 -11.48177 -11.36912 -11.17034 -10.86607 -10.59776 -10.58052 -10.23420 -10.08031 -9.58039 -8.79006 -8.43426 -7.63846 -6.05079 -4.09838 3.31244 3.35868 3.37781 3.48178 4.08642 4.45067 4.77617 4.85056 5.10784 5.28487 5.38792 5.59550 5.71920 5.74742 5.86831 6.00348 6.07517 6.13878 6.24773 6.39777 6.53679 6.88819 7.04185 7.37994 7.63058 7.92374 8.22070 8.31709 8.89211 9.16997 9.55859 11.02780 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046997 B = 0.011033 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.643264 B = 2537.183310 C = 2742.811694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 H 0.095 0.905 4 C -0.125 4.125 5 C 0.130 3.870 6 H 0.067 0.933 7 C -0.149 4.149 8 N -0.595 5.595 9 C 0.256 3.744 10 C -0.524 4.524 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.511 3.489 19 O -0.544 6.544 20 H 0.057 0.943 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 4.602 -10.663 12.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.153 4.153 3 H 0.113 0.887 4 C -0.163 4.163 5 C 0.025 3.975 6 H 0.085 0.915 7 C -0.207 4.207 8 N -0.327 5.327 9 C 0.137 3.863 10 C -0.563 4.563 11 H 0.076 0.924 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.297 3.703 19 O -0.422 6.422 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.424 4.573 -9.874 12.159 hybrid contribution 1.136 -0.024 0.077 1.138 sum -4.288 4.549 -9.797 11.622 Atomic orbital electron populations 1.21582 0.92917 1.02288 1.02011 1.21984 0.97467 1.00643 0.95196 0.88686 1.22772 1.01768 0.95026 0.96771 1.21521 0.98272 0.95762 0.81928 0.91501 1.21998 0.97563 1.02527 0.98571 1.48725 1.59715 1.15846 1.08369 1.19171 0.93123 0.85602 0.88377 1.21408 0.91712 1.16236 1.26914 0.92365 1.24942 0.98921 0.95117 0.95175 1.69924 1.35887 1.19226 1.28414 0.86564 0.85041 0.77976 0.77891 1.20192 1.21177 1.20210 1.20547 0.77945 0.82675 0.89125 1.90646 1.57479 1.71871 1.22191 0.92413 0.92063 0.92024 0.90317 0.90049 0.91668 0.92969 0.91242 0.94287 0.94869 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.17 37.16 0.34 -1.34 16 2 C -0.13 -2.05 3.53 -90.63 -0.32 -2.37 16 3 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.13 -1.69 6.21 -25.10 -0.16 -1.84 16 5 C 0.13 2.16 3.91 -67.01 -0.26 1.90 16 6 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.15 -2.45 8.30 37.16 0.31 -2.14 16 8 N -0.59 -13.11 2.78 -166.24 -0.46 -13.57 16 9 C 0.26 6.78 5.02 -5.19 -0.03 6.75 16 10 C -0.52 -14.81 8.59 -34.44 -0.30 -15.11 16 11 H 0.06 1.65 7.53 -52.48 -0.40 1.25 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 14 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.51 11.29 7.35 -10.86 -0.08 11.21 16 19 O -0.54 -14.47 17.59 5.56 0.10 -14.38 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 24 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 25 H 0.06 1.18 7.78 -51.93 -0.40 0.78 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 28 H 0.04 1.17 7.92 -51.93 -0.41 0.75 16 29 H 0.03 0.88 7.94 -51.93 -0.41 0.47 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 253.88 15.07 3.83 3.83 Total: -1.00 -32.48 253.88 -5.93 -38.41 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -4.51 Total: -3.99 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.59 Total: -1.31 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.27 Total: -39.44 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.10 Total: -14.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.48 -5.93 -38.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.736 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds