Wall clock time and date at job start Mon Mar 30 2020 02:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.54464 * 2 1 4 4 C 1.54625 * 110.48807 * 237.38742 * 2 1 3 5 5 C 1.54482 * 101.76594 * 266.11928 * 4 2 1 6 6 H 1.09004 * 110.24568 * 93.66371 * 5 4 2 7 7 C 1.52997 * 110.24937 * 215.58188 * 5 4 2 8 8 N 1.46772 * 105.47169 * 334.58417 * 5 4 2 9 9 C 1.46499 * 124.34500 * 197.01423 * 8 5 4 10 10 C 1.50702 * 109.47064 * 90.00284 * 9 8 5 11 11 H 1.08004 * 120.00011 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00072 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99892 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00169 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47352 * 59.99721 * 14 12 10 16 16 H 1.48500 * 109.47407 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47220 * 300.00152 * 14 12 10 18 18 C 1.34415 * 111.30087 * 17.01346 * 8 5 4 19 19 O 1.21273 * 124.94203 * 179.62971 * 18 8 5 20 20 H 1.09000 * 109.47256 * 182.61380 * 1 2 3 21 21 H 1.09004 * 109.47218 * 302.61588 * 1 2 3 22 22 H 1.09001 * 109.47338 * 62.60989 * 1 2 3 23 23 H 1.09003 * 110.97561 * 148.00182 * 4 2 1 24 24 H 1.09002 * 111.00336 * 24.24622 * 4 2 1 25 25 H 1.09002 * 109.47153 * 59.99784 * 7 5 4 26 26 H 1.09001 * 109.46832 * 299.99975 * 7 5 4 27 27 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 28 28 H 1.09003 * 109.46605 * 209.99233 * 9 8 5 29 29 H 1.08993 * 109.47545 * 329.99965 * 9 8 5 30 30 H 0.97002 * 119.99646 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0712 -0.7806 -1.2201 5 6 2.2773 -2.1914 -0.6252 6 1 1.3953 -2.8074 -0.8009 7 6 3.5135 -2.8501 -1.2406 8 7 2.4757 -1.9842 0.8142 9 6 3.0531 -2.9797 1.7207 10 6 4.5482 -2.7997 1.7777 11 1 5.0211 -2.0218 1.1966 12 6 5.3125 -3.6280 2.5719 13 7 4.7366 -4.5749 3.2800 14 14 7.1658 -3.4054 2.6421 15 1 7.4822 -2.0416 3.1373 16 1 7.7511 -4.4136 3.5620 17 1 7.7377 -3.5835 1.2832 18 6 2.0595 -0.7638 1.1938 19 8 2.1028 -0.3368 2.3280 20 1 -0.3634 -1.0266 0.0469 21 1 -0.3634 0.5539 0.8656 22 1 -0.3634 0.4728 -0.9125 23 1 3.0163 -0.3605 -1.5641 24 1 1.3388 -0.8009 -2.0271 25 1 4.3928 -2.2419 -1.0285 26 1 3.3813 -2.9340 -2.3194 27 1 3.6472 -3.8435 -0.8122 28 1 2.6332 -2.8496 2.7181 29 1 2.8213 -3.9805 1.3565 30 1 5.2743 -5.1575 3.8390 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306834364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:10 Heat of formation + Delta-G solvation = -71.274337 kcal Electronic energy + Delta-G solvation = -12960.371047 eV Core-core repulsion = 10754.097869 eV Total energy + Delta-G solvation = -2206.273177 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.41896 -37.64661 -35.64868 -33.96556 -31.88112 -29.53144 -27.39413 -25.31670 -24.20892 -21.71071 -20.07731 -18.76233 -17.35983 -16.97343 -16.41230 -16.06235 -15.10048 -14.80560 -14.52849 -14.29085 -13.55510 -13.45891 -13.19004 -13.09004 -13.02921 -12.73162 -12.58903 -12.48928 -12.03890 -11.86638 -11.55582 -11.44716 -10.69544 -10.48523 -9.47330 -8.24718 -6.39345 1.34631 1.38992 1.46249 1.77392 2.31847 2.49506 3.04332 3.45637 3.63671 3.99346 4.18968 4.40900 4.45326 4.58118 4.80367 4.88566 4.93477 4.99807 5.03410 5.10260 5.17703 5.25770 5.36467 5.53108 5.59291 5.89824 6.03021 6.59373 6.68978 7.24642 7.46169 8.82346 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046997 B = 0.011033 C = 0.010206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.643264 B = 2537.183310 C = 2742.811694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.107 4.107 5 C 0.117 3.883 6 H 0.088 0.912 7 C -0.142 4.142 8 N -0.605 5.605 9 C 0.270 3.730 10 C -0.536 4.536 11 H 0.054 0.946 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.967 3.033 15 H -0.279 1.279 16 H -0.278 1.278 17 H -0.259 1.259 18 C 0.489 3.511 19 O -0.606 6.606 20 H 0.053 0.947 21 H 0.047 0.953 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.131 0.869 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.038 0.962 28 H -0.011 1.011 29 H 0.025 0.975 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 5.481 -13.562 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 H 0.126 0.874 4 C -0.145 4.145 5 C 0.015 3.985 6 H 0.106 0.894 7 C -0.200 4.200 8 N -0.336 5.336 9 C 0.150 3.850 10 C -0.574 4.574 11 H 0.072 0.928 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.204 1.204 16 H -0.203 1.203 17 H -0.183 1.183 18 C 0.278 3.722 19 O -0.489 6.489 20 H 0.072 0.928 21 H 0.066 0.934 22 H 0.125 0.875 23 H 0.106 0.894 24 H 0.149 0.851 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.043 0.957 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.384 5.446 -12.836 14.947 hybrid contribution 1.065 -0.328 0.989 1.490 sum -4.319 5.119 -11.846 13.609 Atomic orbital electron populations 1.21624 0.90516 1.02454 1.03761 1.22013 0.99218 1.00333 0.92441 0.87364 1.22841 1.03605 0.91416 0.96595 1.21989 0.99157 0.98789 0.78612 0.89402 1.21943 0.96617 1.00155 1.01292 1.48839 1.58988 1.15197 1.10527 1.18615 0.92606 0.86564 0.87254 1.21609 0.92576 1.16162 1.27097 0.92772 1.25871 1.04092 0.94669 0.94580 1.70047 1.37832 1.20002 1.28984 0.85478 0.78894 0.77716 0.78817 1.20419 1.20277 1.18289 1.21895 0.77062 0.82990 0.90281 1.90590 1.59835 1.73182 1.25312 0.92785 0.93354 0.87521 0.89433 0.85068 0.93794 0.88306 0.94320 0.99274 0.95734 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.17 71.98 0.66 -2.17 16 2 C -0.12 -3.39 3.53 -10.80 -0.04 -3.43 16 3 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 4 C -0.11 -2.39 6.21 31.65 0.20 -2.19 16 5 C 0.12 3.64 3.91 45.44 0.18 3.82 16 6 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 7 C -0.14 -4.42 8.30 71.98 0.60 -3.83 16 8 N -0.60 -27.11 2.78 -798.46 -2.22 -29.33 16 9 C 0.27 15.08 5.02 85.63 0.43 15.51 16 10 C -0.54 -31.28 8.59 25.60 0.22 -31.06 16 11 H 0.05 3.13 7.53 -2.91 -0.02 3.11 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 14 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 C 0.49 21.91 7.35 87.90 0.65 22.56 16 19 O -0.61 -33.87 17.59 -3.01 -0.05 -33.92 16 20 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 22 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 23 H 0.09 1.85 7.91 -2.39 -0.02 1.84 16 24 H 0.13 1.74 7.90 -2.39 -0.02 1.72 16 25 H 0.04 1.53 7.78 -2.39 -0.02 1.52 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.04 1.42 7.69 -2.38 -0.02 1.40 16 28 H -0.01 -0.70 7.92 -2.39 -0.02 -0.72 16 29 H 0.02 1.38 7.94 -2.39 -0.02 1.37 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.65 253.88 4.49 -71.16 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: 1.10 Total: 1.20 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 3.35 Total: 0.06 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.94 Total: -85.84 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.05 Total: -33.92 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.65 4.49 -71.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.111 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds