Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.44136 * 2 1 4 4 C 1.54631 * 110.48797 * 122.68349 * 2 1 3 5 5 C 1.54669 * 101.68484 * 93.66365 * 4 2 1 6 6 H 1.09005 * 110.39589 * 266.74095 * 5 4 2 7 7 C 1.52996 * 110.18316 * 144.68106 * 5 4 2 8 8 N 1.46762 * 105.38105 * 25.76850 * 5 4 2 9 9 C 1.46497 * 124.35023 * 162.85339 * 8 5 4 10 10 C 1.50694 * 109.47115 * 269.72652 * 9 8 5 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.34430 * 111.29954 * 342.58913 * 8 5 4 19 19 O 1.21275 * 124.94053 * 180.69532 * 18 8 5 20 20 H 1.09005 * 109.47232 * 181.08994 * 1 2 3 21 21 H 1.09007 * 109.46814 * 301.08441 * 1 2 3 22 22 H 1.08995 * 109.46944 * 61.08603 * 1 2 3 23 23 H 1.08992 * 110.97077 * 211.99693 * 4 2 1 24 24 H 1.08995 * 110.96903 * 335.72578 * 4 2 1 25 25 H 1.09003 * 109.47237 * 302.65305 * 7 5 4 26 26 H 1.09005 * 109.46699 * 62.64528 * 7 5 4 27 27 H 1.08994 * 109.47320 * 182.65027 * 7 5 4 28 28 H 1.09007 * 109.47078 * 149.72291 * 9 8 5 29 29 H 1.09003 * 109.46733 * 29.73014 * 9 8 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0712 -0.7822 1.2192 5 6 2.2715 -2.1946 0.6214 6 1 1.3863 -2.8078 0.7907 7 6 3.5033 -2.8593 1.2390 8 7 2.4756 -1.9833 -0.8165 9 6 3.0531 -2.9776 -1.7243 10 6 4.5482 -2.7980 -1.7806 11 1 5.0211 -2.0206 -1.1988 12 6 5.3125 -3.6254 -2.5759 13 7 4.7367 -4.5718 -3.2848 14 14 7.1658 -3.4023 -2.6462 15 1 7.7511 -4.4103 -3.5663 16 1 7.4817 -2.0380 -3.1402 17 1 7.7379 -3.5817 -1.2876 18 6 2.0594 -0.7623 -1.1946 19 8 2.1018 -0.3343 -2.3286 20 1 -0.3634 -1.0275 0.0195 21 1 -0.3633 0.5306 0.8802 22 1 -0.3633 0.4969 -0.8995 23 1 3.0162 -0.3625 1.5636 24 1 1.3386 -0.8027 2.0259 25 1 4.3781 -2.2312 1.0703 26 1 3.3487 -2.9866 2.3104 27 1 3.6609 -3.8335 0.7763 28 1 2.6334 -2.8461 -2.7217 29 1 2.8207 -3.9789 -1.3616 30 1 5.2744 -5.1536 -3.8445 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306834367.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = -71.283750 kcal Electronic energy + Delta-G solvation = -12959.574472 eV Core-core repulsion = 10753.300886 eV Total energy + Delta-G solvation = -2206.273586 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.41488 -37.64346 -35.64772 -33.96600 -31.87314 -29.53144 -27.39302 -25.31035 -24.21189 -21.70961 -20.07393 -18.75910 -17.35947 -16.97872 -16.41141 -16.06104 -15.10283 -14.81395 -14.52619 -14.29128 -13.54356 -13.46310 -13.18572 -13.08728 -13.02131 -12.72511 -12.58854 -12.48818 -12.04218 -11.86751 -11.56506 -11.44724 -10.69519 -10.48477 -9.47248 -8.24727 -6.39314 1.34681 1.38973 1.46275 1.77422 2.31836 2.49612 3.04298 3.45699 3.63509 3.99471 4.18692 4.40887 4.45275 4.58244 4.80029 4.88270 4.93664 4.99488 5.03826 5.10304 5.17736 5.25756 5.36676 5.53175 5.59181 5.89868 6.03197 6.59380 6.69037 7.24631 7.46212 8.82327 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046969 B = 0.011030 C = 0.010204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.988581 B = 2537.908556 C = 2743.301707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.107 4.107 5 C 0.117 3.883 6 H 0.089 0.911 7 C -0.142 4.142 8 N -0.605 5.605 9 C 0.270 3.730 10 C -0.536 4.536 11 H 0.054 0.946 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.967 3.033 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.259 1.259 18 C 0.489 3.511 19 O -0.606 6.606 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.131 0.869 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.037 0.963 28 H -0.011 1.011 29 H 0.025 0.975 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 5.446 13.561 15.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 H 0.126 0.874 4 C -0.144 4.144 5 C 0.015 3.985 6 H 0.106 0.894 7 C -0.200 4.200 8 N -0.336 5.336 9 C 0.150 3.850 10 C -0.574 4.574 11 H 0.072 0.928 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.203 1.203 16 H -0.204 1.204 17 H -0.183 1.183 18 C 0.278 3.722 19 O -0.489 6.489 20 H 0.075 0.925 21 H 0.124 0.876 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.149 0.851 25 H 0.063 0.937 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.043 0.957 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.398 5.412 12.835 14.938 hybrid contribution 1.063 -0.320 -0.989 1.487 sum -4.334 5.092 11.845 13.603 Atomic orbital electron populations 1.21627 0.90527 1.02720 1.03511 1.22015 0.99222 1.00334 0.92448 0.87373 1.22864 1.03607 0.91368 0.96577 1.22032 0.99148 0.98733 0.78631 0.89363 1.21941 0.96638 1.00179 1.01257 1.48843 1.58957 1.15157 1.10611 1.18614 0.92603 0.86593 0.87225 1.21607 0.92574 1.16224 1.27041 0.92786 1.25875 1.04094 0.94669 0.94577 1.70047 1.37835 1.20049 1.28927 0.85477 0.78889 0.77719 0.78814 1.20273 1.20413 1.18301 1.21899 0.77045 0.82998 0.90287 1.90590 1.59829 1.73158 1.25350 0.92527 0.87579 0.93539 0.89415 0.85108 0.93729 0.88334 0.94334 0.99289 0.95729 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.17 71.98 0.66 -2.18 16 2 C -0.12 -3.40 3.53 -10.80 -0.04 -3.43 16 3 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 4 C -0.11 -2.38 6.22 31.72 0.20 -2.18 16 5 C 0.12 3.64 3.92 45.51 0.18 3.82 16 6 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 7 C -0.14 -4.42 8.35 71.98 0.60 -3.82 16 8 N -0.60 -27.11 2.78 -798.11 -2.22 -29.33 16 9 C 0.27 15.08 4.98 85.63 0.43 15.50 16 10 C -0.54 -31.29 8.67 25.60 0.22 -31.07 16 11 H 0.05 3.12 7.69 -2.91 -0.02 3.10 16 12 C 0.01 0.39 5.46 84.66 0.46 0.86 16 13 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 14 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 C 0.49 21.91 7.34 87.90 0.65 22.55 16 19 O -0.61 -33.88 17.59 -3.01 -0.05 -33.93 16 20 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 21 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.09 1.86 7.92 -2.39 -0.02 1.84 16 24 H 0.13 1.74 7.90 -2.39 -0.02 1.72 16 25 H 0.04 1.54 8.01 -2.39 -0.02 1.52 16 26 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.04 1.42 7.56 -2.39 -0.02 1.41 16 28 H -0.01 -0.71 7.92 -2.38 -0.02 -0.73 16 29 H 0.02 1.39 7.90 -2.39 -0.02 1.37 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -75.65 254.21 4.49 -71.15 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: 1.10 Total: 1.21 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 3.35 Total: 0.05 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.93 Total: -85.83 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.05 Total: -33.93 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -75.65 4.49 -71.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306834367.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.131 kcal (2) G-P(sol) polarization free energy of solvation -75.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds