Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09001 * 115.50900 * 9.41525 * 13 12 2 15 15 C 1.53002 * 117.43666 * 154.78573 * 13 12 2 16 16 H 1.09005 * 119.80164 * 355.36741 * 15 13 12 17 17 C 1.54471 * 118.06762 * 199.10626 * 15 13 12 18 18 O 1.44425 * 104.80339 * 321.12753 * 17 15 13 19 19 C 1.44423 * 105.27541 * 319.49138 * 18 17 15 20 20 C 1.53003 * 117.43549 * 224.04603 * 13 12 2 21 21 H 1.08999 * 119.80398 * 4.63302 * 20 13 12 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 27 27 H 1.08998 * 110.37559 * 79.96118 * 17 15 13 28 28 H 1.09000 * 110.37392 * 202.18901 * 17 15 13 29 29 H 1.08997 * 110.37157 * 159.34531 * 19 18 17 30 30 H 1.09002 * 110.36911 * 281.67458 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.6208 1.1983 2.1951 15 6 1.9878 -0.3921 3.7448 16 1 1.8025 -1.4605 3.8554 17 6 1.6023 0.5325 4.9208 18 8 2.2887 1.7748 4.6537 19 6 3.5925 1.3917 4.1646 20 6 3.3318 0.1635 3.2282 21 1 4.1618 -0.4852 2.9485 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.5242 0.6914 4.9410 28 1 1.9401 0.1060 5.8653 29 1 4.0431 2.2107 3.6040 30 1 4.2372 1.0980 4.9930 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306973803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -12.745602 kcal Electronic energy + Delta-G solvation = -12550.987612 eV Core-core repulsion = 10347.252431 eV Total energy + Delta-G solvation = -2203.735181 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.92534 -35.96447 -33.71258 -31.55864 -28.41695 -27.72611 -25.15417 -24.24165 -20.54976 -20.15689 -19.86065 -16.46275 -16.19361 -15.64335 -15.01084 -14.70055 -14.05338 -13.35895 -12.75783 -12.44008 -12.37274 -11.85691 -11.43540 -11.26504 -10.95768 -10.94282 -10.62000 -10.18750 -10.03502 -9.93037 -9.87035 -9.28500 -8.91182 -8.37234 -7.28187 -5.99395 -4.03110 3.32324 3.38670 3.43197 3.92186 4.01274 4.42705 4.71908 5.03018 5.14818 5.29176 5.32306 5.49690 5.64504 5.69008 5.82528 5.87491 6.01482 6.23446 6.43974 6.69561 6.83914 6.89169 7.07927 7.34595 7.72726 7.87024 8.25185 8.46669 8.57006 9.03452 9.62043 11.07777 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067261 B = 0.007836 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.188067 B = 3572.596109 C = 3669.971064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.037 0.963 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.653 5.653 13 C 0.084 3.916 14 H 0.095 0.905 15 C -0.230 4.230 16 H 0.118 0.882 17 C 0.076 3.924 18 O -0.377 6.377 19 C 0.072 3.928 20 C -0.192 4.192 21 H 0.125 0.875 22 H 0.028 0.972 23 H 0.090 0.910 24 H 0.007 0.993 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -1.166 11.285 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.282 5.282 13 C -0.027 4.027 14 H 0.112 0.888 15 C -0.249 4.249 16 H 0.136 0.864 17 C -0.001 4.001 18 O -0.296 6.296 19 C -0.005 4.005 20 C -0.212 4.212 21 H 0.143 0.857 22 H 0.047 0.953 23 H 0.108 0.892 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.241 -0.762 10.980 11.233 hybrid contribution -0.544 -0.687 -0.638 1.084 sum 1.698 -1.449 10.342 10.580 Atomic orbital electron populations 1.22457 1.00436 0.99248 1.00696 1.19273 0.89779 0.94506 0.85908 0.94538 1.21121 1.30434 1.12510 0.89545 0.91939 1.24949 0.95310 0.95188 0.99058 1.69882 1.37188 1.23112 1.23419 0.86487 0.79219 0.79224 0.82395 1.20816 1.21317 1.19882 1.60454 1.57235 1.08301 1.02183 1.22316 0.96852 0.97513 0.86069 0.88750 1.24363 1.04092 1.00235 0.96246 0.86435 1.22844 0.97777 0.83894 0.95603 1.89121 1.27356 1.27564 1.85518 1.23279 0.85445 0.96627 0.95115 1.24687 0.92983 0.99884 1.03635 0.85675 0.95321 0.89160 0.97442 0.92999 0.85030 0.89262 0.92001 0.88893 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.41 2.47 -68.87 -0.17 5.24 16 3 H 0.04 1.03 7.73 -51.93 -0.40 0.63 16 4 C -0.50 -13.85 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.79 11.32 55.43 0.63 -25.16 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.65 -14.05 6.47 -100.96 -0.65 -14.70 16 13 C 0.08 1.58 5.32 -67.71 -0.36 1.22 16 14 H 0.09 1.94 7.67 -51.93 -0.40 1.55 16 15 C -0.23 -3.45 6.99 -89.15 -0.62 -4.08 16 16 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 17 C 0.08 1.02 7.53 37.93 0.29 1.30 16 18 O -0.38 -5.91 11.30 -35.23 -0.40 -6.31 16 19 C 0.07 1.01 7.58 39.12 0.30 1.31 16 20 C -0.19 -3.06 7.35 -87.96 -0.65 -3.71 16 21 H 0.13 1.98 8.14 -51.93 -0.42 1.56 16 22 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 23 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 24 H 0.01 0.15 8.07 -51.93 -0.42 -0.27 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 6.68 8.42 -39.29 -0.33 6.35 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 251.33 15.07 3.79 3.79 Total: -1.00 -28.96 251.33 -7.31 -36.27 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.37 Total: 4.76 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -1.28 Total: -15.17 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.03 Total: -39.86 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.40 Total: -6.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.96 -7.31 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306973803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.524 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds