Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09001 * 115.50900 * 9.41525 * 13 12 2 15 15 C 1.53002 * 117.43666 * 154.78573 * 13 12 2 16 16 H 1.09005 * 119.80164 * 355.36741 * 15 13 12 17 17 C 1.54471 * 118.06762 * 199.10626 * 15 13 12 18 18 O 1.44425 * 104.80339 * 321.12753 * 17 15 13 19 19 C 1.44423 * 105.27541 * 319.49138 * 18 17 15 20 20 C 1.53003 * 117.43549 * 224.04603 * 13 12 2 21 21 H 1.08999 * 119.80398 * 4.63302 * 20 13 12 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 26 26 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 27 27 H 1.08998 * 110.37559 * 79.96118 * 17 15 13 28 28 H 1.09000 * 110.37392 * 202.18901 * 17 15 13 29 29 H 1.08997 * 110.37157 * 159.34531 * 19 18 17 30 30 H 1.09002 * 110.36911 * 281.67458 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.6208 1.1983 2.1951 15 6 1.9878 -0.3921 3.7448 16 1 1.8025 -1.4605 3.8554 17 6 1.6023 0.5325 4.9208 18 8 2.2887 1.7748 4.6537 19 6 3.5925 1.3917 4.1646 20 6 3.3318 0.1635 3.2282 21 1 4.1618 -0.4852 2.9485 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7089 1.1612 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.5242 0.6914 4.9410 28 1 1.9401 0.1060 5.8653 29 1 4.0431 2.2107 3.6040 30 1 4.2372 1.0980 4.9930 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306973803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -32.964100 kcal Electronic energy + Delta-G solvation = -12551.864352 eV Core-core repulsion = 10347.252431 eV Total energy + Delta-G solvation = -2204.611921 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.14793 -37.65335 -35.36761 -33.44108 -29.52463 -29.50382 -27.26410 -25.55992 -22.33708 -21.53398 -21.28819 -18.34050 -17.64794 -16.78851 -16.74949 -16.11274 -15.59910 -15.09082 -14.45079 -14.23162 -13.64994 -13.44662 -13.05393 -12.88199 -12.77184 -12.41486 -12.39086 -12.21147 -11.95917 -11.43898 -11.04675 -11.02008 -10.51340 -10.44097 -8.97048 -8.11895 -6.24038 1.42901 1.43610 1.54917 2.42082 2.64218 2.84298 3.16572 3.42411 3.81867 3.95077 4.05072 4.23525 4.41125 4.52323 4.68965 4.73524 4.79451 4.79924 4.86174 4.96872 5.05700 5.11294 5.39953 5.65866 5.79696 5.80664 6.23410 6.57846 6.75279 6.89940 7.45968 8.94132 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.067261 B = 0.007836 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.188067 B = 3572.596109 C = 3669.971064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.002 1.002 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.653 5.653 13 C 0.045 3.955 14 H 0.067 0.933 15 C -0.202 4.202 16 H 0.135 0.865 17 C 0.074 3.926 18 O -0.400 6.400 19 C 0.074 3.926 20 C -0.189 4.189 21 H 0.127 0.873 22 H 0.035 0.965 23 H 0.063 0.937 24 H 0.022 0.978 25 H 0.262 0.738 26 H 0.337 0.663 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 -2.242 12.478 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.111 3.889 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.195 1.195 12 N -0.282 5.282 13 C -0.066 4.066 14 H 0.085 0.915 15 C -0.221 4.221 16 H 0.153 0.847 17 C -0.002 4.002 18 O -0.319 6.319 19 C -0.003 4.003 20 C -0.209 4.209 21 H 0.145 0.855 22 H 0.054 0.946 23 H 0.081 0.919 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.156 0.844 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.746 -1.841 12.199 12.639 hybrid contribution -0.706 -0.316 -0.945 1.222 sum 2.039 -2.157 11.254 11.638 Atomic orbital electron populations 1.22252 0.99700 0.99420 1.00046 1.18982 0.90225 0.92507 0.87227 0.98413 1.21419 1.30728 1.12603 0.90915 0.92507 1.25766 0.95391 0.95854 1.02055 1.70016 1.37935 1.24246 1.24127 0.85454 0.78812 0.78181 0.78544 1.19890 1.20934 1.19452 1.60331 1.57030 1.08675 1.02198 1.22202 1.00550 0.96455 0.87380 0.91488 1.24450 1.02458 1.01244 0.93951 0.84686 1.23079 0.98367 0.82821 0.95951 1.89106 1.28225 1.28941 1.85669 1.23416 0.85418 0.95755 0.95673 1.24757 0.92809 1.01087 1.02209 0.85470 0.94560 0.91865 0.95896 0.92899 0.84434 0.88467 0.88659 0.89032 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.64 8.94 71.98 0.64 -6.99 16 2 C 0.22 11.44 2.47 44.17 0.11 11.55 16 3 H 0.00 -0.12 7.73 -2.39 -0.02 -0.14 16 4 C -0.52 -29.28 8.84 25.60 0.23 -29.05 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 6 C 0.01 0.42 5.30 84.66 0.45 0.87 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 N -0.65 -28.30 6.47 -473.31 -3.06 -31.36 16 13 C 0.05 1.70 5.32 44.92 0.24 1.94 16 14 H 0.07 2.86 7.67 -2.39 -0.02 2.84 16 15 C -0.20 -5.59 6.99 -9.84 -0.07 -5.66 16 16 H 0.14 3.30 8.14 -2.38 -0.02 3.28 16 17 C 0.07 1.76 7.53 72.48 0.55 2.31 16 18 O -0.40 -11.74 11.30 -148.98 -1.68 -13.42 16 19 C 0.07 1.91 7.58 73.25 0.56 2.47 16 20 C -0.19 -5.73 7.35 -9.07 -0.07 -5.79 16 21 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 22 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 23 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 24 H 0.02 1.00 8.07 -2.38 -0.02 0.99 16 25 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 26 H 0.34 13.46 8.42 -89.69 -0.76 12.70 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -62.54 251.33 0.52 -62.02 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.37 Total: 18.65 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 2.63 Total: -28.35 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.82 Total: -85.19 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -1.68 Total: -13.42 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -62.54 0.52 -62.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306973803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.052 kcal (2) G-P(sol) polarization free energy of solvation -62.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds