Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 H 1.08995 * 115.51042 * 9.62893 * 13 12 2 15 15 C 1.52992 * 117.42996 * 154.99989 * 13 12 2 16 16 H 1.09002 * 119.81525 * 354.34902 * 15 13 12 17 17 C 1.54487 * 118.06498 * 198.08236 * 15 13 12 18 18 O 1.44428 * 104.80133 * 321.12894 * 17 15 13 19 19 C 1.44422 * 105.27626 * 319.48940 * 18 17 15 20 20 C 1.53001 * 117.43038 * 224.34809 * 13 12 2 21 21 H 1.09002 * 119.80733 * 4.62975 * 20 13 12 22 22 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 23 23 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 24 24 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 26 26 H 1.00897 * 111.00496 * 208.95166 * 12 2 1 27 27 H 1.08994 * 110.36934 * 79.96095 * 17 15 13 28 28 H 1.08995 * 110.37261 * 202.29911 * 17 15 13 29 29 H 1.09006 * 110.36850 * 159.34241 * 19 18 17 30 30 H 1.08991 * 110.37123 * 281.56634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 1 1.9268 1.2763 -2.1160 15 6 3.0708 -0.1156 -3.4647 16 1 3.7570 -0.9542 -3.3461 17 6 3.4676 1.0076 -4.4485 18 8 2.2480 1.7474 -4.6751 19 6 1.2105 0.7481 -4.7789 20 6 1.5518 -0.2902 -3.6872 21 1 1.0793 -1.2709 -3.7435 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.9026 -0.5284 4.4375 26 1 2.9173 -1.1206 -1.0288 27 1 4.2251 1.6522 -4.0028 28 1 3.8325 0.5820 -5.3832 29 1 0.2342 1.1934 -4.5871 30 1 1.2280 0.2840 -5.7650 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306973804.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = -5.852289 kcal Electronic energy + Delta-G solvation = -12622.337575 eV Core-core repulsion = 10418.901310 eV Total energy + Delta-G solvation = -2203.436265 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.09871 -36.12079 -33.77751 -31.77190 -28.72196 -28.55584 -25.23664 -24.34272 -20.49056 -20.18891 -19.89532 -16.83637 -16.30578 -15.73038 -15.40172 -14.93561 -13.87107 -13.54721 -13.37975 -12.67548 -12.49439 -12.12690 -11.82148 -11.40159 -11.24419 -11.09839 -10.70161 -10.31517 -9.99952 -9.94451 -9.59269 -9.32318 -9.01868 -8.63396 -7.56113 -6.13405 -4.13974 3.25919 3.35712 3.37976 3.78729 3.90852 4.36134 4.56363 4.92209 5.09525 5.18430 5.21653 5.41723 5.49018 5.60712 5.73826 5.76693 5.89505 6.12214 6.24106 6.38592 6.56000 6.69964 6.80464 6.81324 7.34800 7.51400 7.87786 8.23686 8.54638 8.89768 9.48316 10.99411 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059319 B = 0.008824 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.910213 B = 3172.249596 C = 3314.855500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.184 3.816 3 H 0.005 0.995 4 C -0.524 4.524 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.647 5.647 13 C 0.081 3.919 14 H 0.095 0.905 15 C -0.224 4.224 16 H 0.122 0.878 17 C 0.075 3.925 18 O -0.378 6.378 19 C 0.073 3.927 20 C -0.195 4.195 21 H 0.123 0.877 22 H 0.028 0.972 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.265 0.735 26 H 0.345 0.655 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 3.057 -13.976 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.562 4.562 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.278 5.278 13 C -0.031 4.031 14 H 0.112 0.888 15 C -0.243 4.243 16 H 0.140 0.860 17 C -0.002 4.002 18 O -0.297 6.297 19 C -0.004 4.004 20 C -0.214 4.214 21 H 0.141 0.859 22 H 0.047 0.953 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.166 0.834 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.843 3.022 -13.930 14.279 hybrid contribution 0.164 0.859 0.440 0.979 sum -0.679 3.881 -13.490 14.054 Atomic orbital electron populations 1.22063 0.98474 1.01054 0.97892 1.19611 0.91947 0.93054 0.87823 0.97732 1.21081 1.32592 1.13892 0.88601 0.90329 1.24920 0.95641 0.96756 0.95692 1.69890 1.45412 1.40224 0.97961 0.86790 0.80672 0.83485 0.76868 1.20430 1.22448 1.19291 1.60168 1.32333 1.30834 1.04440 1.22364 0.97673 0.96127 0.86934 0.88772 1.24392 0.93639 1.02377 1.03915 0.86035 1.22874 0.88030 0.92734 0.96594 1.89123 1.17377 1.29811 1.93403 1.22894 0.92224 0.88698 0.96539 1.24267 0.96390 1.01882 0.98907 0.85889 0.95327 0.94421 0.92376 0.92500 0.83366 0.89091 0.91807 0.89033 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.90 37.16 0.33 -2.78 16 2 C 0.18 4.41 2.15 -68.86 -0.15 4.26 16 3 H 0.01 0.13 6.63 -51.93 -0.34 -0.22 16 4 C -0.52 -14.64 9.17 -34.44 -0.32 -14.95 16 5 H 0.08 2.35 7.86 -52.49 -0.41 1.94 16 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 7 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 8 Si 0.89 22.14 24.37 -169.99 -4.14 18.00 16 9 H -0.28 -6.73 6.87 56.52 0.39 -6.34 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 12 N -0.65 -13.29 6.54 -100.95 -0.66 -13.95 16 13 C 0.08 1.42 5.40 -67.71 -0.37 1.06 16 14 H 0.09 1.80 7.52 -51.93 -0.39 1.41 16 15 C -0.22 -3.20 7.05 -89.05 -0.63 -3.82 16 16 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.07 0.95 7.53 37.94 0.29 1.24 16 18 O -0.38 -5.60 11.31 -35.23 -0.40 -6.00 16 19 C 0.07 0.95 7.53 37.93 0.29 1.23 16 20 C -0.19 -2.86 7.18 -89.05 -0.64 -3.50 16 21 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 22 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 23 H 0.04 0.88 3.27 -51.93 -0.17 0.71 16 24 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.35 7.01 8.18 -39.29 -0.32 6.69 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 243.88 15.07 3.68 3.68 Total: -1.00 -29.94 243.88 -6.24 -36.19 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.20 Total: 3.88 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -1.29 Total: -15.28 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.11 Total: -40.46 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.40 Total: -6.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.94 -6.24 -36.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306973804.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.335 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds