Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 110.42870 * 2 1 4 4 C 1.51280 * 110.27337 * 122.73337 * 2 1 3 5 5 O 1.21279 * 124.94746 * 282.61707 * 4 2 1 6 6 N 1.34424 * 110.11212 * 102.75440 * 4 2 1 7 7 C 1.46493 * 124.35202 * 179.43896 * 6 4 2 8 8 C 1.50706 * 109.47128 * 269.69927 * 7 6 4 9 9 H 1.08005 * 119.99758 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47483 * 269.99808 * 12 10 8 14 14 H 1.48499 * 109.47134 * 30.00322 * 12 10 8 15 15 H 1.48507 * 109.46904 * 150.00145 * 12 10 8 16 16 C 1.46766 * 111.29696 * 359.17117 * 6 4 2 17 17 C 1.54470 * 105.47613 * 17.28118 * 16 6 4 18 18 H 1.09001 * 110.96991 * 92.70314 * 17 16 6 19 19 C 1.53000 * 110.97071 * 216.46562 * 17 16 6 20 20 H 1.09004 * 109.46793 * 182.54222 * 1 2 3 21 21 H 1.08999 * 109.46718 * 302.53469 * 1 2 3 22 22 H 1.08992 * 109.47409 * 62.54210 * 1 2 3 23 23 H 1.09001 * 109.47786 * 149.70199 * 7 6 4 24 24 H 1.09006 * 109.47401 * 29.69784 * 7 6 4 25 25 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 26 26 H 1.09003 * 110.24598 * 136.28325 * 16 6 4 27 27 H 1.09001 * 110.24583 * 258.18852 * 16 6 4 28 28 H 1.09000 * 109.47090 * 58.54721 * 19 17 16 29 29 H 1.09008 * 109.47278 * 178.54631 * 19 17 16 30 30 H 1.08996 * 109.47239 * 298.54331 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0543 -0.7673 1.1937 5 8 2.0913 -0.3444 2.3298 6 7 2.4759 -1.9852 0.8115 7 6 3.0533 -2.9818 1.7167 8 6 4.5485 -2.8019 1.7740 9 1 5.0213 -2.0233 1.1937 10 6 5.3128 -3.6312 2.5671 11 7 4.7371 -4.5796 3.2733 12 14 7.1661 -3.4085 2.6374 13 1 7.8048 -4.2385 1.5845 14 1 7.5019 -1.9795 2.4129 15 1 7.6651 -3.8307 3.9709 16 6 2.2774 -2.1905 -0.6281 17 6 2.0712 -0.7791 -1.2211 18 1 3.0163 -0.3585 -1.5647 19 6 1.0425 -0.8058 -2.3533 20 1 -0.3633 -1.0267 0.0456 21 1 -0.3633 0.5527 0.8664 22 1 -0.3634 0.4738 -0.9118 23 1 2.8216 -3.9822 1.3513 24 1 2.6334 -2.8531 2.7144 25 1 3.7747 -4.6954 3.2364 26 1 3.1581 -2.6592 -1.0672 27 1 1.3959 -2.8072 -0.8032 28 1 0.0956 -1.1909 -1.9749 29 1 0.8970 0.2044 -2.7360 30 1 1.4020 -1.4500 -3.1557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -50.998731 kcal Electronic energy + Delta-G solvation = -12837.115715 eV Core-core repulsion = 10631.721754 eV Total energy + Delta-G solvation = -2205.393961 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01863 -36.11824 -34.39329 -32.44629 -29.83505 -27.82594 -25.19036 -24.85626 -22.66415 -19.79002 -18.76204 -16.97306 -16.34456 -15.24164 -14.53661 -14.31251 -13.95414 -13.70493 -12.98274 -12.55153 -12.44702 -12.17271 -11.95864 -11.65004 -11.55880 -11.38959 -10.85542 -10.61833 -10.54517 -10.35480 -10.12339 -9.15037 -8.90065 -8.41498 -7.63993 -6.42105 -4.14917 3.35670 3.41337 3.47144 3.62427 3.98243 4.51621 4.60965 4.73847 4.91611 5.22264 5.32781 5.46211 5.48787 5.63952 5.74194 5.81265 5.91085 5.98880 6.06144 6.13777 6.24548 6.42711 6.75361 7.01227 7.46243 7.98938 8.13557 8.39570 8.74181 9.05100 9.55526 10.94979 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051850 B = 0.009687 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.886523 B = 2889.921905 C = 3041.693083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 H 0.097 0.903 4 C 0.512 3.488 5 O -0.543 6.543 6 N -0.596 5.596 7 C 0.244 3.756 8 C -0.610 4.610 9 H 0.053 0.947 10 C 0.019 3.981 11 N -0.909 5.909 12 Si 1.076 2.924 13 H -0.287 1.287 14 H -0.288 1.288 15 H -0.282 1.282 16 C 0.109 3.891 17 C -0.103 4.103 18 H 0.087 0.913 19 C -0.140 4.140 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.023 0.977 24 H 0.031 0.969 25 H 0.268 0.732 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 5.912 -11.511 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.147 4.147 3 H 0.115 0.885 4 C 0.298 3.702 5 O -0.421 6.421 6 N -0.327 5.327 7 C 0.125 3.875 8 C -0.649 4.649 9 H 0.071 0.929 10 C -0.185 4.185 11 N -0.545 5.545 12 Si 0.903 3.097 13 H -0.214 1.214 14 H -0.215 1.215 15 H -0.208 1.208 16 C -0.015 4.015 17 C -0.122 4.122 18 H 0.105 0.895 19 C -0.198 4.198 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.306 5.437 -10.159 12.685 hybrid contribution -1.279 0.538 -0.762 1.583 sum -6.585 5.974 -10.920 14.082 Atomic orbital electron populations 1.21661 0.92929 1.02189 1.02135 1.21995 0.97585 1.00513 0.94575 0.88522 1.20591 0.77784 0.82579 0.89244 1.90648 1.57359 1.71986 1.22073 1.48412 1.59728 1.16015 1.08548 1.19271 0.94164 0.85660 0.88439 1.22307 0.91719 1.19761 1.31072 0.92863 1.25862 1.07043 0.92960 0.92626 1.70782 1.12917 1.31493 1.39274 0.83449 0.73864 0.75637 0.76705 1.21360 1.21456 1.20778 1.22017 1.01291 0.96249 0.81975 1.22188 0.99758 0.95615 0.94670 0.89489 1.21821 0.98780 1.01848 0.97338 0.92418 0.92183 0.91518 0.95873 0.95109 0.92207 0.90509 0.92146 0.91847 0.92266 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 7.94 37.16 0.30 -1.40 16 2 C -0.12 -1.96 3.46 -90.63 -0.31 -2.28 16 3 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 4 C 0.51 11.44 7.33 -10.86 -0.08 11.36 16 5 O -0.54 -14.57 17.59 5.56 0.10 -14.47 16 6 N -0.60 -13.42 2.92 -173.79 -0.51 -13.92 16 7 C 0.24 6.55 5.00 -5.19 -0.03 6.53 16 8 C -0.61 -17.90 9.39 -34.44 -0.32 -18.22 16 9 H 0.05 1.58 7.81 -52.48 -0.41 1.17 16 10 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 11 N -0.91 -27.99 13.65 55.43 0.76 -27.24 16 12 Si 1.08 25.92 29.90 -169.99 -5.08 20.84 16 13 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.11 1.83 6.91 -3.13 -0.02 1.81 16 17 C -0.10 -1.40 3.66 -88.99 -0.33 -1.73 16 18 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.14 -1.38 8.02 37.16 0.30 -1.08 16 20 H 0.06 0.75 7.74 -51.93 -0.40 0.35 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.66 6.83 -51.93 -0.35 0.30 16 23 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 24 H 0.03 0.91 7.78 -51.93 -0.40 0.51 16 25 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 0.90 7.89 -51.93 -0.41 0.49 16 28 H 0.06 0.60 6.33 -51.93 -0.33 0.27 16 29 H 0.06 0.50 8.03 -51.92 -0.42 0.09 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 250.92 15.07 3.78 3.78 Total: -1.00 -34.10 250.92 -5.90 -39.99 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -4.35 Total: -4.44 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -0.59 Total: -4.54 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.25 Total: -41.16 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.10 Total: -14.47 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -34.10 -5.90 -39.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.006 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds