Wall clock time and date at job start Mon Mar 30 2020 02:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 110.42870 * 2 1 4 4 C 1.51280 * 110.27337 * 122.73337 * 2 1 3 5 5 O 1.21279 * 124.94746 * 282.61707 * 4 2 1 6 6 N 1.34424 * 110.11212 * 102.75440 * 4 2 1 7 7 C 1.46493 * 124.35202 * 179.43896 * 6 4 2 8 8 C 1.50706 * 109.47128 * 269.69927 * 7 6 4 9 9 H 1.08005 * 119.99758 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00102 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00217 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47483 * 269.99808 * 12 10 8 14 14 H 1.48499 * 109.47134 * 30.00322 * 12 10 8 15 15 H 1.48507 * 109.46904 * 150.00145 * 12 10 8 16 16 C 1.46766 * 111.29696 * 359.17117 * 6 4 2 17 17 C 1.54470 * 105.47613 * 17.28118 * 16 6 4 18 18 H 1.09001 * 110.96991 * 92.70314 * 17 16 6 19 19 C 1.53000 * 110.97071 * 216.46562 * 17 16 6 20 20 H 1.09004 * 109.46793 * 182.54222 * 1 2 3 21 21 H 1.08999 * 109.46718 * 302.53469 * 1 2 3 22 22 H 1.08992 * 109.47409 * 62.54210 * 1 2 3 23 23 H 1.09001 * 109.47786 * 149.70199 * 7 6 4 24 24 H 1.09006 * 109.47401 * 29.69784 * 7 6 4 25 25 H 0.97001 * 119.99646 * 359.97438 * 11 10 8 26 26 H 1.09003 * 110.24598 * 136.28325 * 16 6 4 27 27 H 1.09001 * 110.24583 * 258.18852 * 16 6 4 28 28 H 1.09000 * 109.47090 * 58.54721 * 19 17 16 29 29 H 1.09008 * 109.47278 * 178.54631 * 19 17 16 30 30 H 1.08996 * 109.47239 * 298.54331 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0543 -0.7673 1.1937 5 8 2.0913 -0.3444 2.3298 6 7 2.4759 -1.9852 0.8115 7 6 3.0533 -2.9818 1.7167 8 6 4.5485 -2.8019 1.7740 9 1 5.0213 -2.0233 1.1937 10 6 5.3128 -3.6312 2.5671 11 7 4.7371 -4.5796 3.2733 12 14 7.1661 -3.4085 2.6374 13 1 7.8048 -4.2385 1.5845 14 1 7.5019 -1.9795 2.4129 15 1 7.6651 -3.8307 3.9709 16 6 2.2774 -2.1905 -0.6281 17 6 2.0712 -0.7791 -1.2211 18 1 3.0163 -0.3585 -1.5647 19 6 1.0425 -0.8058 -2.3533 20 1 -0.3633 -1.0267 0.0456 21 1 -0.3633 0.5527 0.8664 22 1 -0.3634 0.4738 -0.9118 23 1 2.8216 -3.9822 1.3513 24 1 2.6334 -2.8531 2.7144 25 1 3.7747 -4.6954 3.2364 26 1 3.1581 -2.6592 -1.0672 27 1 1.3959 -2.8072 -0.8032 28 1 0.0956 -1.1909 -1.9749 29 1 0.8970 0.2044 -2.7360 30 1 1.4020 -1.4500 -3.1557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:45 Heat of formation + Delta-G solvation = -74.469320 kcal Electronic energy + Delta-G solvation = -12838.133476 eV Core-core repulsion = 10631.721754 eV Total energy + Delta-G solvation = -2206.411722 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58649 -37.79170 -36.30363 -34.37120 -30.96670 -29.64972 -26.73106 -26.28751 -24.63270 -21.09520 -20.41695 -19.14873 -17.88863 -16.77616 -16.26977 -15.77046 -15.69875 -15.47361 -14.48296 -14.08177 -13.83511 -13.68341 -13.49107 -13.19952 -13.14640 -12.59590 -12.53414 -12.28243 -12.00271 -11.66988 -11.50729 -11.24071 -10.71728 -10.59996 -9.57267 -8.77599 -6.54995 1.45952 1.56563 1.63472 1.75030 2.27479 2.49601 3.01643 3.36337 3.45405 3.84579 4.05843 4.35664 4.45283 4.54978 4.59397 4.62396 4.72761 4.86439 4.90390 4.95257 5.08824 5.21134 5.25493 5.49671 5.58286 5.71809 6.05930 6.35664 6.40864 7.18038 7.32254 8.57012 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051850 B = 0.009687 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.886523 B = 2889.921905 C = 3041.693083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.113 4.113 3 H 0.110 0.890 4 C 0.491 3.509 5 O -0.603 6.603 6 N -0.607 5.607 7 C 0.252 3.748 8 C -0.625 4.625 9 H 0.045 0.955 10 C -0.030 4.030 11 N -0.927 5.927 12 Si 1.124 2.876 13 H -0.260 1.260 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.099 3.901 17 C -0.088 4.088 18 H 0.092 0.908 19 C -0.134 4.134 20 H 0.054 0.946 21 H 0.048 0.952 22 H 0.110 0.890 23 H 0.023 0.977 24 H -0.010 1.010 25 H 0.256 0.744 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 6.779 -14.182 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.134 4.134 3 H 0.128 0.872 4 C 0.280 3.720 5 O -0.486 6.486 6 N -0.338 5.338 7 C 0.130 3.870 8 C -0.663 4.663 9 H 0.064 0.936 10 C -0.229 4.229 11 N -0.564 5.564 12 Si 0.944 3.056 13 H -0.185 1.185 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.023 4.023 17 C -0.107 4.107 18 H 0.111 0.889 19 C -0.191 4.191 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.128 0.872 23 H 0.041 0.959 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.379 6.297 -12.897 15.327 hybrid contribution -1.316 0.251 0.082 1.342 sum -6.695 6.548 -12.815 15.872 Atomic orbital electron populations 1.21711 0.90394 1.02431 1.03875 1.22038 0.99459 1.00133 0.91789 0.87206 1.21937 0.76847 0.82814 0.90394 1.90593 1.59661 1.73220 1.25109 1.48548 1.59109 1.15473 1.10627 1.18834 0.93288 0.87005 0.87829 1.22569 0.92986 1.19586 1.31162 0.93641 1.27483 1.11649 0.92098 0.91644 1.70902 1.12323 1.32705 1.40451 0.82857 0.68551 0.76554 0.77639 1.18470 1.20416 1.20423 1.22415 1.02105 0.99246 0.78557 1.22238 1.01384 0.92278 0.94767 0.88950 1.21827 0.97558 1.03847 0.95894 0.92708 0.93270 0.87177 0.95896 0.99223 0.93498 0.90959 0.89868 0.91135 0.89875 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 7.94 71.99 0.57 -2.31 16 2 C -0.11 -3.31 3.46 -10.80 -0.04 -3.35 16 3 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 4 C 0.49 22.32 7.33 87.90 0.64 22.97 16 5 O -0.60 -33.89 17.59 -3.03 -0.05 -33.95 16 6 N -0.61 -27.84 2.92 -822.32 -2.40 -30.24 16 7 C 0.25 14.14 5.00 85.64 0.43 14.56 16 8 C -0.62 -37.61 9.39 25.60 0.24 -37.37 16 9 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 10 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 11 N -0.93 -58.45 13.65 21.45 0.29 -58.16 16 12 Si 1.12 51.87 29.90 68.60 2.05 53.92 16 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.10 3.18 6.91 86.83 0.60 3.78 16 17 C -0.09 -2.10 3.66 -9.74 -0.04 -2.13 16 18 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 19 C -0.13 -1.94 8.02 71.98 0.58 -1.37 16 20 H 0.05 1.28 7.74 -2.38 -0.02 1.27 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.11 1.60 6.83 -2.39 -0.02 1.58 16 23 H 0.02 1.27 8.01 -2.39 -0.02 1.25 16 24 H -0.01 -0.65 7.78 -2.38 -0.02 -0.67 16 25 H 0.26 16.30 7.22 -92.71 -0.67 15.63 16 26 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.08 2.30 7.89 -2.39 -0.02 2.28 16 28 H 0.07 0.97 6.33 -2.39 -0.02 0.95 16 29 H 0.08 0.89 8.03 -2.38 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -77.82 250.92 4.55 -73.27 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.21 Total: 1.71 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 3.45 Total: -6.57 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -2.10 Total: -88.39 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.05 Total: -33.95 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.05 Total: 53.92 kcal Total: -77.82 4.55 -73.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.201 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds