Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 110.85633 * 2 1 4 4 C 1.54475 * 111.00098 * 123.80803 * 2 1 3 5 5 N 1.46762 * 105.47377 * 143.54566 * 4 2 1 6 6 C 1.46502 * 124.35115 * 162.98350 * 5 4 2 7 7 C 1.50698 * 109.47038 * 90.00459 * 6 5 4 8 8 H 1.08006 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00057 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99923 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46864 * 90.00568 * 11 9 7 13 13 H 1.48502 * 109.47010 * 210.00416 * 11 9 7 14 14 H 1.48496 * 109.47365 * 330.00280 * 11 9 7 15 15 C 1.34654 * 111.33613 * 342.87888 * 5 4 2 16 16 O 1.21281 * 125.07381 * 180.51847 * 15 5 4 17 17 C 1.51276 * 109.98388 * 0.57918 * 15 5 4 18 18 H 1.09003 * 110.49053 * 257.34541 * 17 15 5 19 19 C 1.53006 * 110.48506 * 134.83964 * 17 15 5 20 20 H 1.08995 * 109.47432 * 183.78895 * 1 2 3 21 21 H 1.08998 * 109.47116 * 303.79399 * 1 2 3 22 22 H 1.09004 * 109.47212 * 63.78939 * 1 2 3 23 23 H 1.09000 * 110.25019 * 262.55196 * 4 2 1 24 24 H 1.09004 * 110.24188 * 24.46655 * 4 2 1 25 25 H 1.09001 * 109.47354 * 210.00565 * 6 5 4 26 26 H 1.09001 * 109.46691 * 330.00708 * 6 5 4 27 27 H 0.96999 * 119.99979 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.47002 * 303.23997 * 19 17 15 29 29 H 1.08993 * 109.46955 * 63.24434 * 19 17 15 30 30 H 1.09000 * 109.47050 * 183.24263 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0187 0.0000 4 6 2.0836 -0.8024 1.1983 5 7 3.2861 -1.4773 0.6956 6 6 4.3275 -2.0550 1.5488 7 6 3.9913 -3.4933 1.8477 8 1 3.0920 -3.9332 1.4423 9 6 4.8316 -4.2477 2.6387 10 7 4.5384 -5.5030 2.8992 11 14 6.3873 -3.4871 3.3394 12 1 6.0901 -2.8829 4.6629 13 1 7.4246 -4.5380 3.4967 14 1 6.8838 -2.4359 2.4155 15 6 3.3088 -1.4996 -0.6505 16 8 4.1826 -2.0025 -1.3246 17 6 2.0834 -0.8030 -1.1999 18 1 1.3499 -1.5337 -1.5409 19 6 2.4699 0.1388 -2.3421 20 1 -0.3634 -1.0253 0.0679 21 1 -0.3633 0.5716 0.8540 22 1 -0.3634 0.4539 -0.9220 23 1 2.3426 -0.1294 2.0157 24 1 1.3498 -1.5359 1.5324 25 1 5.2873 -2.0056 1.0347 26 1 4.3855 -1.4941 2.4816 27 1 5.1298 -6.0338 3.4554 28 1 3.2121 0.8541 -1.9879 29 1 2.8875 -0.4407 -3.1653 30 1 1.5851 0.6741 -2.6868 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024483.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -46.542103 kcal Electronic energy + Delta-G solvation = -12769.547408 eV Core-core repulsion = 10564.346701 eV Total energy + Delta-G solvation = -2205.200707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90252 -36.00072 -34.18662 -32.29104 -30.32236 -28.55468 -25.44957 -24.48949 -21.94198 -20.35246 -18.58399 -16.98157 -16.06098 -15.62035 -14.44212 -14.15107 -13.86597 -13.57901 -13.22341 -12.61014 -12.47318 -12.31333 -11.83747 -11.82367 -11.61680 -11.38201 -10.87700 -10.71903 -10.57685 -10.34042 -10.13104 -9.55505 -8.89975 -8.61423 -7.69175 -6.10956 -4.10442 3.25346 3.33502 3.37017 3.38365 3.94316 4.37354 4.62488 4.75823 4.86426 5.20773 5.34561 5.47343 5.54123 5.58502 5.76455 5.84162 6.00025 6.05879 6.10474 6.12292 6.28786 6.44359 6.62673 6.87012 7.42287 7.57724 8.09136 8.44542 8.91458 9.03996 9.49036 11.02399 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049559 B = 0.010077 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.848722 B = 2777.818049 C = 2958.015213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.225 3.775 7 C -0.533 4.533 8 H 0.075 0.925 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.264 1.264 15 C 0.514 3.486 16 O -0.538 6.538 17 C -0.125 4.125 18 H 0.102 0.898 19 C -0.129 4.129 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.265 0.735 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 12.852 -4.068 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 H 0.104 0.896 4 C -0.015 4.015 5 N -0.330 5.330 6 C 0.105 3.895 7 C -0.572 4.572 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.300 3.700 16 O -0.416 6.416 17 C -0.147 4.147 18 H 0.120 0.880 19 C -0.187 4.187 20 H 0.079 0.921 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.426 12.380 -4.242 14.579 hybrid contribution 0.752 0.103 0.613 0.975 sum -5.674 12.483 -3.630 14.184 Atomic orbital electron populations 1.21742 0.93664 1.02412 1.01806 1.22258 0.96454 0.99237 0.94273 0.89574 1.22048 0.87967 0.95455 0.96048 1.48350 1.22323 1.55869 1.06428 1.19589 0.86502 0.94273 0.89117 1.21363 1.10198 0.94229 1.31383 0.90683 1.24872 0.97689 0.94712 0.95774 1.69897 1.38004 1.07461 1.38056 0.86849 0.83589 0.79589 0.79754 1.19999 1.20816 1.18863 1.20635 0.86952 0.79649 0.82767 1.90649 1.40796 1.47518 1.62598 1.22039 0.97592 0.98729 0.96332 0.87953 1.21576 1.01042 0.98602 0.97489 0.92095 0.92218 0.92307 0.91120 0.91172 0.94380 0.95489 0.92491 0.92639 0.91769 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.14 37.16 0.34 -1.03 16 2 C -0.10 -1.31 3.27 -88.99 -0.29 -1.60 16 3 H 0.09 0.98 7.91 -51.92 -0.41 0.56 16 4 C 0.11 1.76 6.92 -3.13 -0.02 1.74 16 5 N -0.60 -12.98 2.92 -173.72 -0.51 -13.48 16 6 C 0.23 5.67 4.75 -5.19 -0.02 5.64 16 7 C -0.53 -15.67 9.94 -34.44 -0.34 -16.02 16 8 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 11 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 15 C 0.51 11.11 7.46 -10.76 -0.08 11.02 16 16 O -0.54 -13.92 17.45 5.56 0.10 -13.82 16 17 C -0.13 -1.91 3.08 -90.63 -0.28 -2.19 16 18 H 0.10 1.49 7.90 -51.93 -0.41 1.08 16 19 C -0.13 -1.67 9.07 37.16 0.34 -1.33 16 20 H 0.06 0.63 8.05 -51.93 -0.42 0.22 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 1.15 7.82 -51.93 -0.41 0.75 16 25 H 0.04 1.02 7.00 -51.93 -0.36 0.66 16 26 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 27 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 253.13 15.07 3.81 3.81 Total: -1.00 -33.97 253.13 -5.48 -39.45 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.53 Total: -4.09 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.46 Total: -1.73 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.27 Total: -40.60 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.10 Total: -13.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.97 -5.48 -39.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024483.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.092 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds