Wall clock time and date at job start Mon Mar 30 2020 02:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 110.85633 * 2 1 4 4 C 1.54475 * 111.00098 * 123.80803 * 2 1 3 5 5 N 1.46762 * 105.47377 * 143.54566 * 4 2 1 6 6 C 1.46502 * 124.35115 * 162.98350 * 5 4 2 7 7 C 1.50698 * 109.47038 * 90.00459 * 6 5 4 8 8 H 1.08006 * 119.99931 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00056 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00057 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 119.99923 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46864 * 90.00568 * 11 9 7 13 13 H 1.48502 * 109.47010 * 210.00416 * 11 9 7 14 14 H 1.48496 * 109.47365 * 330.00280 * 11 9 7 15 15 C 1.34654 * 111.33613 * 342.87888 * 5 4 2 16 16 O 1.21281 * 125.07381 * 180.51847 * 15 5 4 17 17 C 1.51276 * 109.98388 * 0.57918 * 15 5 4 18 18 H 1.09003 * 110.49053 * 257.34541 * 17 15 5 19 19 C 1.53006 * 110.48506 * 134.83964 * 17 15 5 20 20 H 1.08995 * 109.47432 * 183.78895 * 1 2 3 21 21 H 1.08998 * 109.47116 * 303.79399 * 1 2 3 22 22 H 1.09004 * 109.47212 * 63.78939 * 1 2 3 23 23 H 1.09000 * 110.25019 * 262.55196 * 4 2 1 24 24 H 1.09004 * 110.24188 * 24.46655 * 4 2 1 25 25 H 1.09001 * 109.47354 * 210.00565 * 6 5 4 26 26 H 1.09001 * 109.46691 * 330.00708 * 6 5 4 27 27 H 0.96999 * 119.99979 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.47002 * 303.23997 * 19 17 15 29 29 H 1.08993 * 109.46955 * 63.24434 * 19 17 15 30 30 H 1.09000 * 109.47050 * 183.24263 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0187 0.0000 4 6 2.0836 -0.8024 1.1983 5 7 3.2861 -1.4773 0.6956 6 6 4.3275 -2.0550 1.5488 7 6 3.9913 -3.4933 1.8477 8 1 3.0920 -3.9332 1.4423 9 6 4.8316 -4.2477 2.6387 10 7 4.5384 -5.5030 2.8992 11 14 6.3873 -3.4871 3.3394 12 1 6.0901 -2.8829 4.6629 13 1 7.4246 -4.5380 3.4967 14 1 6.8838 -2.4359 2.4155 15 6 3.3088 -1.4996 -0.6505 16 8 4.1826 -2.0025 -1.3246 17 6 2.0834 -0.8030 -1.1999 18 1 1.3499 -1.5337 -1.5409 19 6 2.4699 0.1388 -2.3421 20 1 -0.3634 -1.0253 0.0679 21 1 -0.3633 0.5716 0.8540 22 1 -0.3634 0.4539 -0.9220 23 1 2.3426 -0.1294 2.0157 24 1 1.3498 -1.5359 1.5324 25 1 5.2873 -2.0056 1.0347 26 1 4.3855 -1.4941 2.4816 27 1 5.1298 -6.0338 3.4554 28 1 3.2121 0.8541 -1.9879 29 1 2.8875 -0.4407 -3.1653 30 1 1.5851 0.6741 -2.6868 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024483.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:47 Heat of formation + Delta-G solvation = -70.612448 kcal Electronic energy + Delta-G solvation = -12770.591176 eV Core-core repulsion = 10564.346701 eV Total energy + Delta-G solvation = -2206.244476 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.41600 -37.61606 -35.92259 -34.32045 -31.41924 -30.43197 -26.77597 -26.02309 -23.67247 -21.54321 -20.20697 -19.19726 -17.52941 -17.36976 -16.30331 -15.74639 -15.17870 -15.04774 -14.59289 -14.52831 -13.75999 -13.69277 -13.36352 -13.24240 -12.98768 -12.62887 -12.46523 -12.20607 -12.11262 -11.83100 -11.73774 -11.46913 -10.87956 -10.55018 -9.47211 -8.39530 -6.46715 1.29465 1.34263 1.45033 1.70870 2.27268 2.34646 2.93515 3.43261 3.54034 3.82585 4.22280 4.41883 4.49248 4.61319 4.65292 4.66554 4.80577 4.87837 4.97448 5.06561 5.13494 5.21380 5.33798 5.38153 5.51045 5.67327 6.18546 6.44429 6.54687 7.13876 7.36218 8.77615 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049559 B = 0.010077 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.848722 B = 2777.818049 C = 2958.015213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.111 0.889 4 C 0.097 3.903 5 N -0.611 5.611 6 C 0.231 3.769 7 C -0.547 4.547 8 H 0.025 0.975 9 C 0.011 3.989 10 N -0.943 5.943 11 Si 0.953 3.047 12 H -0.248 1.248 13 H -0.279 1.279 14 H -0.255 1.255 15 C 0.492 3.508 16 O -0.596 6.596 17 C -0.117 4.117 18 H 0.109 0.891 19 C -0.124 4.124 20 H 0.049 0.951 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.018 0.982 26 H 0.054 0.946 27 H 0.271 0.729 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.621 15.739 -3.602 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.129 0.871 4 C -0.025 4.025 5 N -0.341 5.341 6 C 0.109 3.891 7 C -0.586 4.586 8 H 0.043 0.957 9 C -0.188 4.188 10 N -0.583 5.583 11 Si 0.775 3.225 12 H -0.172 1.172 13 H -0.204 1.204 14 H -0.179 1.179 15 C 0.281 3.719 16 O -0.477 6.477 17 C -0.138 4.138 18 H 0.127 0.873 19 C -0.182 4.182 20 H 0.068 0.932 21 H 0.097 0.903 22 H 0.100 0.900 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.072 15.301 -3.766 17.272 hybrid contribution 0.858 -0.879 0.443 1.306 sum -6.215 14.422 -3.323 16.052 Atomic orbital electron populations 1.21746 0.91002 1.02453 1.03951 1.22301 0.98353 0.99140 0.90430 0.87054 1.22436 0.85805 0.95756 0.98493 1.48556 1.23216 1.55711 1.06665 1.19288 0.86991 0.92293 0.90493 1.21573 1.08797 0.96736 1.31479 0.95658 1.25929 1.01749 0.95092 0.96000 1.70053 1.39836 1.09288 1.39098 0.85639 0.78132 0.78861 0.79909 1.17154 1.20409 1.17936 1.21914 0.88167 0.79072 0.82714 1.90593 1.43399 1.49942 1.63802 1.22107 0.94334 0.99202 0.98141 0.87324 1.21592 1.02805 0.97950 0.95832 0.93165 0.90294 0.89968 0.88830 0.92013 0.96353 0.92825 0.92041 0.92608 0.93449 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.14 71.98 0.66 -1.42 16 2 C -0.08 -1.83 3.27 -9.74 -0.03 -1.86 16 3 H 0.11 1.96 7.91 -2.38 -0.02 1.94 16 4 C 0.10 2.98 6.92 86.83 0.60 3.58 16 5 N -0.61 -26.59 2.92 -821.98 -2.40 -28.99 16 6 C 0.23 11.72 4.75 85.63 0.41 12.13 16 7 C -0.55 -33.36 9.94 25.60 0.25 -33.11 16 8 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 9 C 0.01 0.64 5.47 84.65 0.46 1.10 16 10 N -0.94 -60.44 13.96 21.45 0.30 -60.14 16 11 Si 0.95 44.70 27.47 68.60 1.88 46.58 16 12 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 H -0.26 -11.54 6.54 99.48 0.65 -10.89 16 15 C 0.49 21.58 7.46 87.86 0.66 22.24 16 16 O -0.60 -32.08 17.45 -3.03 -0.05 -32.14 16 17 C -0.12 -3.36 3.08 -10.80 -0.03 -3.39 16 18 H 0.11 3.01 7.90 -2.39 -0.02 2.99 16 19 C -0.12 -2.88 9.07 71.98 0.65 -2.23 16 20 H 0.05 0.90 8.05 -2.39 -0.02 0.88 16 21 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.06 1.99 7.82 -2.39 -0.02 1.97 16 25 H 0.02 1.00 7.00 -2.39 -0.02 0.98 16 26 H 0.05 2.42 7.57 -2.39 -0.02 2.40 16 27 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -78.47 253.13 4.40 -74.07 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.04 Total: 3.56 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 3.63 Total: -2.95 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.10 Total: -89.13 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.05 Total: -32.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.58 kcal Total: -78.47 4.40 -74.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024483.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.458 kcal (2) G-P(sol) polarization free energy of solvation -78.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds