Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.88734 * 2 1 4 4 C 1.54831 * 111.07465 * 236.05378 * 2 1 3 5 5 N 1.46765 * 105.49704 * 216.48949 * 4 2 1 6 6 C 1.46493 * 124.35316 * 197.05968 * 5 4 2 7 7 C 1.50702 * 109.47128 * 269.95348 * 6 5 4 8 8 H 1.07994 * 119.99938 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99728 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00285 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99696 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46991 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47118 * 120.00059 * 11 9 7 14 14 H 1.48508 * 109.46819 * 239.99849 * 11 9 7 15 15 C 1.34418 * 111.29577 * 17.03926 * 5 4 2 16 16 O 1.21288 * 124.94305 * 179.62769 * 15 5 4 17 17 C 1.51281 * 110.11952 * 359.59413 * 15 5 4 18 18 H 1.09002 * 110.48898 * 102.42432 * 17 15 5 19 19 C 1.53004 * 110.48726 * 224.93866 * 17 15 5 20 20 H 1.09001 * 109.46834 * 296.19510 * 1 2 3 21 21 H 1.09008 * 109.46935 * 56.18798 * 1 2 3 22 22 H 1.08991 * 109.47622 * 176.18745 * 1 2 3 23 23 H 1.09001 * 110.21730 * 97.49832 * 4 2 1 24 24 H 1.08998 * 110.33453 * 335.54738 * 4 2 1 25 25 H 1.08999 * 109.47198 * 29.95483 * 6 5 4 26 26 H 1.09004 * 109.47045 * 149.95424 * 6 5 4 27 27 H 0.96995 * 120.00238 * 179.97438 * 10 9 7 28 28 H 1.08993 * 109.47263 * 56.75334 * 19 17 15 29 29 H 1.08996 * 109.47128 * 176.75820 * 19 17 15 30 30 H 1.09005 * 109.46820 * 296.75481 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0867 -0.8068 -1.1985 5 7 3.2887 -1.4805 -0.6932 6 6 4.3315 -2.0590 -1.5441 7 6 3.9968 -3.4981 -1.8407 8 1 3.0976 -3.9379 -1.4355 9 6 4.8394 -4.2536 -2.6285 10 7 5.9348 -3.7181 -3.1215 11 14 4.4241 -6.0372 -2.9967 12 1 3.1470 -6.3960 -2.3294 13 1 4.2853 -6.2204 -4.4637 14 1 5.5106 -6.9133 -2.4891 15 6 3.3100 -1.4981 0.6507 16 8 4.1856 -1.9976 1.3251 17 6 2.0833 -0.8035 1.1997 18 1 1.3504 -1.5354 1.5393 19 6 2.4676 0.1378 2.3430 20 1 -0.3633 0.4537 0.9221 21 1 -0.3633 0.5719 -0.8539 22 1 -0.3634 -1.0253 -0.0683 23 1 2.3467 -0.1350 -2.0166 24 1 1.3548 -1.5419 -1.5330 25 1 4.3903 -1.4997 -2.4778 26 1 5.2908 -2.0077 -1.0289 27 1 6.5276 -4.2496 -3.6753 28 1 3.2093 0.8542 1.9901 29 1 1.5819 0.6716 2.6874 30 1 2.8854 -0.4420 3.1661 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -51.306858 kcal Electronic energy + Delta-G solvation = -12740.098230 eV Core-core repulsion = 10534.690907 eV Total energy + Delta-G solvation = -2205.407323 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.80989 -35.89672 -34.10514 -32.29412 -30.25613 -27.95214 -25.35054 -24.46678 -22.24731 -20.31504 -18.51409 -16.62302 -15.91709 -15.49355 -14.38065 -14.24556 -13.80503 -13.48131 -13.22794 -12.45359 -12.41440 -12.18362 -11.74508 -11.61075 -11.36970 -11.26161 -10.85029 -10.69680 -10.63944 -10.29432 -10.12766 -9.62975 -8.79099 -8.45694 -7.63194 -6.06858 -4.12253 3.28831 3.35949 3.40058 3.48686 4.07901 4.44673 4.68019 4.82388 4.91273 5.26739 5.39455 5.51347 5.57710 5.62860 5.82693 5.88516 6.03861 6.09869 6.15004 6.17192 6.33296 6.48674 7.01167 7.35249 7.60949 7.90555 8.19864 8.28716 8.87920 9.15967 9.54084 11.01005 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048617 B = 0.009623 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.795829 B = 2908.964036 C = 3090.753832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.086 0.914 4 C 0.108 3.892 5 N -0.600 5.600 6 C 0.254 3.746 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.900 3.100 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.126 4.126 18 H 0.100 0.900 19 C -0.129 4.129 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 8.102 4.442 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.104 0.896 4 C -0.016 4.016 5 N -0.332 5.332 6 C 0.135 3.865 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.142 4.142 10 N -0.534 5.534 11 Si 0.728 3.272 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.296 3.704 16 O -0.420 6.420 17 C -0.148 4.148 18 H 0.118 0.882 19 C -0.187 4.187 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.781 7.758 4.594 13.303 hybrid contribution -0.169 -1.061 -0.428 1.156 sum -9.950 6.698 4.166 12.697 Atomic orbital electron populations 1.21732 0.93811 1.02251 1.01755 1.22321 0.96279 0.99291 0.94397 0.89592 1.22086 0.88104 0.95397 0.96000 1.48629 1.22453 1.55522 1.06576 1.19228 0.85347 0.92991 0.88912 1.21504 1.08253 0.96215 1.30830 0.92295 1.24960 0.94792 0.98785 0.95650 1.69941 1.12360 1.36793 1.34288 0.86409 0.78507 0.84498 0.77831 1.19759 1.20886 1.20808 1.20570 0.86928 0.79854 0.83028 1.90645 1.40697 1.47923 1.62701 1.22051 0.97726 0.98693 0.96325 0.88219 1.21569 1.00977 0.98641 0.97498 0.92366 0.92256 0.92236 0.91159 0.91523 0.94804 0.94086 0.92689 0.92603 0.92358 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.15 37.16 0.34 -1.05 16 2 C -0.10 -1.36 3.29 -88.80 -0.29 -1.66 16 3 H 0.09 1.03 7.91 -51.93 -0.41 0.62 16 4 C 0.11 1.81 6.93 -2.93 -0.02 1.79 16 5 N -0.60 -13.44 2.92 -173.56 -0.51 -13.95 16 6 C 0.25 6.84 5.68 -5.20 -0.03 6.81 16 7 C -0.53 -15.37 9.39 -34.44 -0.32 -15.69 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 11 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.51 11.30 7.45 -10.86 -0.08 11.22 16 16 O -0.54 -14.34 17.43 5.55 0.10 -14.24 16 17 C -0.13 -1.98 3.08 -90.63 -0.28 -2.26 16 18 H 0.10 1.47 7.90 -51.93 -0.41 1.06 16 19 C -0.13 -1.73 9.07 37.16 0.34 -1.39 16 20 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 22 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.10 7.84 -51.93 -0.41 0.69 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 1.23 7.93 -51.93 -0.41 0.82 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 256.74 15.07 3.87 3.87 Total: -1.00 -33.05 256.74 -5.83 -38.88 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -4.56 Total: -4.96 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.45 Total: -0.58 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.23 Total: -40.04 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.10 Total: -14.24 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -33.05 -5.83 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.425 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds