Wall clock time and date at job start Mon Mar 30 2020 02:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 110.88734 * 2 1 4 4 C 1.54831 * 111.07465 * 236.05378 * 2 1 3 5 5 N 1.46765 * 105.49704 * 216.48949 * 4 2 1 6 6 C 1.46493 * 124.35316 * 197.05968 * 5 4 2 7 7 C 1.50702 * 109.47128 * 269.95348 * 6 5 4 8 8 H 1.07994 * 119.99938 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99728 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00285 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99696 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46991 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47118 * 120.00059 * 11 9 7 14 14 H 1.48508 * 109.46819 * 239.99849 * 11 9 7 15 15 C 1.34418 * 111.29577 * 17.03926 * 5 4 2 16 16 O 1.21288 * 124.94305 * 179.62769 * 15 5 4 17 17 C 1.51281 * 110.11952 * 359.59413 * 15 5 4 18 18 H 1.09002 * 110.48898 * 102.42432 * 17 15 5 19 19 C 1.53004 * 110.48726 * 224.93866 * 17 15 5 20 20 H 1.09001 * 109.46834 * 296.19510 * 1 2 3 21 21 H 1.09008 * 109.46935 * 56.18798 * 1 2 3 22 22 H 1.08991 * 109.47622 * 176.18745 * 1 2 3 23 23 H 1.09001 * 110.21730 * 97.49832 * 4 2 1 24 24 H 1.08998 * 110.33453 * 335.54738 * 4 2 1 25 25 H 1.08999 * 109.47198 * 29.95483 * 6 5 4 26 26 H 1.09004 * 109.47045 * 149.95424 * 6 5 4 27 27 H 0.96995 * 120.00238 * 179.97438 * 10 9 7 28 28 H 1.08993 * 109.47263 * 56.75334 * 19 17 15 29 29 H 1.08996 * 109.47128 * 176.75820 * 19 17 15 30 30 H 1.09005 * 109.46820 * 296.75481 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0867 -0.8068 -1.1985 5 7 3.2887 -1.4805 -0.6932 6 6 4.3315 -2.0590 -1.5441 7 6 3.9968 -3.4981 -1.8407 8 1 3.0976 -3.9379 -1.4355 9 6 4.8394 -4.2536 -2.6285 10 7 5.9348 -3.7181 -3.1215 11 14 4.4241 -6.0372 -2.9967 12 1 3.1470 -6.3960 -2.3294 13 1 4.2853 -6.2204 -4.4637 14 1 5.5106 -6.9133 -2.4891 15 6 3.3100 -1.4981 0.6507 16 8 4.1856 -1.9976 1.3251 17 6 2.0833 -0.8035 1.1997 18 1 1.3504 -1.5354 1.5393 19 6 2.4676 0.1378 2.3430 20 1 -0.3633 0.4537 0.9221 21 1 -0.3633 0.5719 -0.8539 22 1 -0.3634 -1.0253 -0.0683 23 1 2.3467 -0.1350 -2.0166 24 1 1.3548 -1.5419 -1.5330 25 1 4.3903 -1.4997 -2.4778 26 1 5.2908 -2.0077 -1.0289 27 1 6.5276 -4.2496 -3.6753 28 1 3.2093 0.8542 1.9901 29 1 1.5819 0.6716 2.6874 30 1 2.8854 -0.4420 3.1661 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024484.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:49 Heat of formation + Delta-G solvation = -73.662893 kcal Electronic energy + Delta-G solvation = -12741.067660 eV Core-core repulsion = 10534.690907 eV Total energy + Delta-G solvation = -2206.376753 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38169 -37.56439 -35.92909 -34.24982 -31.37852 -29.87300 -26.75982 -26.12426 -23.95430 -21.53696 -20.18095 -18.78468 -17.44572 -17.34383 -16.31882 -15.85737 -15.08028 -14.90916 -14.72448 -14.24795 -13.65139 -13.50535 -13.33511 -13.11900 -12.96118 -12.72470 -12.49737 -12.42149 -12.09003 -11.83995 -11.67695 -11.45480 -10.72476 -10.48894 -9.49680 -8.28779 -6.45310 1.33748 1.36267 1.48591 1.75817 2.29206 2.47278 2.99939 3.45686 3.54989 3.83736 4.23148 4.43529 4.51217 4.61886 4.68151 4.84269 4.89065 4.99768 5.06739 5.08498 5.14839 5.22353 5.34765 5.51811 5.53762 5.84986 5.97828 6.53086 6.64198 7.20473 7.42817 8.78486 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048617 B = 0.009623 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.795829 B = 2908.964036 C = 3090.753832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.104 0.896 4 C 0.098 3.902 5 N -0.612 5.612 6 C 0.266 3.734 7 C -0.551 4.551 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.973 3.027 12 H -0.268 1.268 13 H -0.265 1.265 14 H -0.279 1.279 15 C 0.489 3.511 16 O -0.600 6.600 17 C -0.114 4.114 18 H 0.115 0.885 19 C -0.125 4.125 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.028 0.972 26 H -0.005 1.005 27 H 0.270 0.730 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.036 8.609 4.489 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.122 0.878 4 C -0.025 4.025 5 N -0.342 5.342 6 C 0.145 3.855 7 C -0.589 4.589 8 H 0.071 0.929 9 C -0.192 4.192 10 N -0.566 5.566 11 Si 0.796 3.204 12 H -0.192 1.192 13 H -0.190 1.190 14 H -0.205 1.205 15 C 0.278 3.722 16 O -0.483 6.483 17 C -0.135 4.135 18 H 0.133 0.867 19 C -0.183 4.183 20 H 0.100 0.900 21 H 0.095 0.905 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.013 0.987 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.120 0.880 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.383 8.302 4.628 15.610 hybrid contribution 0.667 -1.183 -0.457 1.433 sum -11.716 7.118 4.171 14.329 Atomic orbital electron populations 1.21732 0.90638 1.02711 1.03874 1.22361 0.98550 0.98869 0.90543 0.87758 1.22472 0.85962 0.95848 0.98190 1.48727 1.23158 1.55517 1.06845 1.18718 0.85232 0.92904 0.88654 1.21733 1.08386 0.97362 1.31440 0.92947 1.25923 0.94446 1.03669 0.95139 1.70051 1.13214 1.38757 1.34596 0.85293 0.78315 0.78282 0.78469 1.19181 1.19027 1.20488 1.21890 0.88276 0.79258 0.82758 1.90590 1.43396 1.50388 1.63882 1.22101 0.94348 0.99191 0.97902 0.86739 1.21593 1.02718 0.97989 0.95961 0.89969 0.90480 0.92629 0.90016 0.91180 0.95444 0.98707 0.92147 0.93125 0.87989 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.15 71.98 0.66 -1.37 16 2 C -0.08 -1.94 3.29 -9.61 -0.03 -1.97 16 3 H 0.10 2.07 7.91 -2.39 -0.02 2.05 16 4 C 0.10 3.14 6.93 86.95 0.60 3.74 16 5 N -0.61 -28.03 2.92 -821.62 -2.40 -30.43 16 6 C 0.27 15.02 5.68 85.64 0.49 15.51 16 7 C -0.55 -32.91 9.39 25.60 0.24 -32.67 16 8 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 11 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.49 22.12 7.45 87.90 0.66 22.78 16 16 O -0.60 -33.36 17.43 -3.05 -0.05 -33.41 16 17 C -0.11 -3.34 3.08 -10.80 -0.03 -3.38 16 18 H 0.11 3.06 7.90 -2.39 -0.02 3.04 16 19 C -0.13 -3.04 9.07 71.98 0.65 -2.38 16 20 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 21 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 22 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 23 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 24 H 0.07 2.21 7.84 -2.39 -0.02 2.19 16 25 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 26 H -0.01 -0.33 7.93 -2.38 -0.02 -0.35 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -75.40 256.74 4.65 -70.74 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.10 Total: 0.86 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 3.69 Total: 1.16 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.11 Total: -86.92 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.05 Total: -33.41 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.40 4.65 -70.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024484.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.919 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds