Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.88407 * 2 1 4 4 C 1.54480 * 110.96584 * 123.80092 * 2 1 3 5 5 N 1.46766 * 105.47089 * 92.70467 * 4 2 1 6 6 C 1.46500 * 124.34988 * 196.74972 * 5 4 2 7 7 C 1.50697 * 109.47220 * 89.99836 * 6 5 4 8 8 H 1.08002 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00256 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99726 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00204 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47468 * 89.99844 * 11 9 7 13 13 H 1.48497 * 109.47245 * 210.00148 * 11 9 7 14 14 H 1.48505 * 109.47240 * 329.99608 * 11 9 7 15 15 C 1.34413 * 111.30232 * 17.01742 * 5 4 2 16 16 O 1.21284 * 124.94565 * 179.56847 * 15 5 4 17 17 C 1.51284 * 110.11346 * 359.58991 * 15 5 4 18 18 H 1.08998 * 110.48546 * 102.43268 * 17 15 5 19 19 C 1.53007 * 110.48784 * 225.06924 * 17 15 5 20 20 H 1.08998 * 109.47333 * 297.65423 * 1 2 3 21 21 H 1.09006 * 109.46707 * 57.64875 * 1 2 3 22 22 H 1.08997 * 109.46992 * 177.64596 * 1 2 3 23 23 H 1.09008 * 110.24751 * 333.70683 * 4 2 1 24 24 H 1.08998 * 110.32145 * 211.74496 * 4 2 1 25 25 H 1.08997 * 109.47154 * 210.00067 * 6 5 4 26 26 H 1.09002 * 109.47147 * 329.99855 * 6 5 4 27 27 H 0.97001 * 119.99968 * 180.02562 * 10 9 7 28 28 H 1.08994 * 109.47070 * 174.77497 * 19 17 15 29 29 H 1.09007 * 109.46796 * 294.77882 * 19 17 15 30 30 H 1.09002 * 109.46856 * 54.77159 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0828 -0.8025 1.1987 5 7 2.2852 -2.1667 0.6966 6 6 2.4599 -3.3443 1.5504 7 6 1.1143 -3.9566 1.8431 8 1 0.2187 -3.5131 1.4337 9 6 1.0267 -5.0829 2.6335 10 7 2.1172 -5.6226 3.1324 11 14 -0.6411 -5.8423 2.9957 12 1 -0.9625 -6.8510 1.9544 13 1 -0.6074 -6.4988 4.3273 14 1 -1.6795 -4.7806 2.9936 15 6 2.2955 -2.1959 -0.6471 16 8 2.4525 -3.1933 -1.3191 17 6 2.0834 -0.8036 -1.1995 18 1 3.0285 -0.3799 -1.5391 19 6 1.0657 -0.8298 -2.3417 20 1 -0.3634 0.4770 0.9102 21 1 -0.3633 0.5500 -0.8682 22 1 -0.3633 -1.0268 -0.0422 23 1 1.3616 -0.8045 2.0161 24 1 3.0299 -0.3792 1.5332 25 1 3.0876 -4.0740 1.0390 26 1 2.9353 -3.0479 2.4854 27 1 2.0556 -6.4152 3.6882 28 1 0.8560 0.1898 -2.6649 29 1 1.4722 -1.3996 -3.1774 30 1 0.1442 -1.2984 -1.9965 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307024485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = -48.157966 kcal Electronic energy + Delta-G solvation = -12918.407188 eV Core-core repulsion = 10713.136411 eV Total energy + Delta-G solvation = -2205.270776 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.91443 -35.91144 -34.13948 -32.33459 -29.63720 -28.09168 -25.50954 -24.55636 -22.56554 -19.79911 -18.38587 -16.70080 -15.87776 -15.40305 -14.44229 -14.35303 -14.23534 -13.16498 -13.04801 -12.63444 -12.27440 -12.03002 -11.63692 -11.57108 -11.30849 -11.03236 -10.81020 -10.69192 -10.53626 -10.36381 -10.12888 -9.63846 -8.77805 -8.45031 -7.62444 -6.06488 -4.11903 3.30285 3.35857 3.37666 3.48462 4.11904 4.44364 4.71259 4.82947 5.03250 5.26888 5.35377 5.59323 5.62949 5.73621 5.89757 5.98856 6.08828 6.10768 6.23973 6.27548 6.38818 6.59031 7.01755 7.36029 7.61197 7.90935 8.20403 8.29753 8.88094 9.16695 9.54348 11.01335 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.010729 C = 0.010311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.735016 B = 2609.225237 C = 2714.807128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.087 0.913 4 C 0.106 3.894 5 N -0.599 5.599 6 C 0.254 3.746 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.126 4.126 18 H 0.097 0.903 19 C -0.131 4.131 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.264 0.736 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.879 12.430 -4.428 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.330 5.330 6 C 0.135 3.865 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.727 3.273 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.296 3.704 16 O -0.420 6.420 17 C -0.148 4.148 18 H 0.115 0.885 19 C -0.188 4.188 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.717 11.670 -4.571 12.650 hybrid contribution -0.822 -0.480 0.414 1.038 sum -2.538 11.190 -4.157 12.204 Atomic orbital electron populations 1.21830 0.94088 1.02644 1.01394 1.22183 0.96741 0.98806 0.94267 0.89432 1.22031 1.00166 0.82877 0.96752 1.48612 1.69336 1.08562 1.06532 1.19212 0.97374 0.81023 0.88858 1.21454 0.93049 1.11530 1.30702 0.92327 1.24951 0.97003 0.96546 0.95642 1.69932 1.27471 1.21900 1.34078 0.86475 0.83820 0.79438 0.77574 1.20502 1.21093 1.19870 1.20574 0.76873 0.89878 0.83043 1.90644 1.51273 1.37262 1.62872 1.22002 1.00720 0.95599 0.96485 0.88484 1.21625 0.98779 1.01272 0.97173 0.92442 0.92371 0.91906 0.90371 0.92197 0.94123 0.94831 0.92651 0.92366 0.92130 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.89 37.16 0.29 -1.55 16 2 C -0.10 -1.36 3.65 -88.99 -0.33 -1.68 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.11 1.76 6.90 -3.12 -0.02 1.74 16 5 N -0.60 -13.30 2.92 -173.78 -0.51 -13.80 16 6 C 0.25 6.81 5.69 -5.20 -0.03 6.78 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.54 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 11 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.51 11.24 7.45 -10.86 -0.08 11.16 16 16 O -0.54 -14.33 17.43 5.55 0.10 -14.23 16 17 C -0.13 -1.97 3.44 -90.63 -0.31 -2.28 16 18 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.13 -1.83 7.98 37.16 0.30 -1.54 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.63 7.17 -51.93 -0.37 0.26 16 22 H 0.06 1.00 7.50 -51.93 -0.39 0.61 16 23 H 0.08 1.31 7.91 -51.92 -0.41 0.90 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.04 1.22 7.92 -51.93 -0.41 0.81 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.06 0.63 7.86 -51.93 -0.41 0.22 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.93 6.63 -51.93 -0.34 0.59 16 LS Contribution 252.30 15.07 3.80 3.80 Total: -1.00 -32.82 252.30 -5.91 -38.73 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -4.42 Total: -4.19 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.60 Total: -1.27 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.23 Total: -39.83 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.10 Total: -14.23 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.82 -5.91 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.424 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds