Wall clock time and date at job start Mon Mar 30 2020 02:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.88407 * 2 1 4 4 C 1.54480 * 110.96584 * 123.80092 * 2 1 3 5 5 N 1.46766 * 105.47089 * 92.70467 * 4 2 1 6 6 C 1.46500 * 124.34988 * 196.74972 * 5 4 2 7 7 C 1.50697 * 109.47220 * 89.99836 * 6 5 4 8 8 H 1.08002 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00256 * 180.02562 * 7 6 5 10 10 N 1.31509 * 119.99726 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00204 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47468 * 89.99844 * 11 9 7 13 13 H 1.48497 * 109.47245 * 210.00148 * 11 9 7 14 14 H 1.48505 * 109.47240 * 329.99608 * 11 9 7 15 15 C 1.34413 * 111.30232 * 17.01742 * 5 4 2 16 16 O 1.21284 * 124.94565 * 179.56847 * 15 5 4 17 17 C 1.51284 * 110.11346 * 359.58991 * 15 5 4 18 18 H 1.08998 * 110.48546 * 102.43268 * 17 15 5 19 19 C 1.53007 * 110.48784 * 225.06924 * 17 15 5 20 20 H 1.08998 * 109.47333 * 297.65423 * 1 2 3 21 21 H 1.09006 * 109.46707 * 57.64875 * 1 2 3 22 22 H 1.08997 * 109.46992 * 177.64596 * 1 2 3 23 23 H 1.09008 * 110.24751 * 333.70683 * 4 2 1 24 24 H 1.08998 * 110.32145 * 211.74496 * 4 2 1 25 25 H 1.08997 * 109.47154 * 210.00067 * 6 5 4 26 26 H 1.09002 * 109.47147 * 329.99855 * 6 5 4 27 27 H 0.97001 * 119.99968 * 180.02562 * 10 9 7 28 28 H 1.08994 * 109.47070 * 174.77497 * 19 17 15 29 29 H 1.09007 * 109.46796 * 294.77882 * 19 17 15 30 30 H 1.09002 * 109.46856 * 54.77159 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0828 -0.8025 1.1987 5 7 2.2852 -2.1667 0.6966 6 6 2.4599 -3.3443 1.5504 7 6 1.1143 -3.9566 1.8431 8 1 0.2187 -3.5131 1.4337 9 6 1.0267 -5.0829 2.6335 10 7 2.1172 -5.6226 3.1324 11 14 -0.6411 -5.8423 2.9957 12 1 -0.9625 -6.8510 1.9544 13 1 -0.6074 -6.4988 4.3273 14 1 -1.6795 -4.7806 2.9936 15 6 2.2955 -2.1959 -0.6471 16 8 2.4525 -3.1933 -1.3191 17 6 2.0834 -0.8036 -1.1995 18 1 3.0285 -0.3799 -1.5391 19 6 1.0657 -0.8298 -2.3417 20 1 -0.3634 0.4770 0.9102 21 1 -0.3633 0.5500 -0.8682 22 1 -0.3633 -1.0268 -0.0422 23 1 1.3616 -0.8045 2.0161 24 1 3.0299 -0.3792 1.5332 25 1 3.0876 -4.0740 1.0390 26 1 2.9353 -3.0479 2.4854 27 1 2.0556 -6.4152 3.6882 28 1 0.8560 0.1898 -2.6649 29 1 1.4722 -1.3996 -3.1774 30 1 0.1442 -1.2984 -1.9965 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307024485.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:51 Heat of formation + Delta-G solvation = -70.593418 kcal Electronic energy + Delta-G solvation = -12919.380062 eV Core-core repulsion = 10713.136411 eV Total energy + Delta-G solvation = -2206.243650 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.45741 -37.58356 -35.95541 -34.29828 -30.88061 -29.95667 -27.04054 -26.05437 -24.41310 -21.12675 -20.02105 -18.78744 -17.54356 -17.08983 -16.32895 -16.00229 -15.47291 -14.74543 -14.58475 -14.25202 -13.91716 -13.51964 -13.41207 -12.87227 -12.81648 -12.68960 -12.61153 -12.29051 -11.96123 -11.85608 -11.61555 -11.55101 -10.72424 -10.45978 -9.46179 -8.27751 -6.44055 1.33785 1.37047 1.47032 1.77927 2.31292 2.50281 3.01026 3.46439 3.57162 3.93292 4.14223 4.45268 4.54204 4.64194 4.74383 4.85041 4.92161 4.94066 5.02599 5.09095 5.14454 5.23696 5.30083 5.52073 5.56089 5.86587 5.99557 6.56374 6.65585 7.21779 7.45432 8.79209 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.010729 C = 0.010311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.735016 B = 2609.225237 C = 2714.807128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.140 0.860 4 C 0.095 3.905 5 N -0.610 5.610 6 C 0.266 3.734 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.970 3.030 12 H -0.279 1.279 13 H -0.271 1.271 14 H -0.261 1.261 15 C 0.489 3.511 16 O -0.603 6.603 17 C -0.114 4.114 18 H 0.126 0.874 19 C -0.128 4.128 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.022 0.978 23 H 0.073 0.927 24 H 0.085 0.915 25 H -0.007 1.007 26 H 0.027 0.973 27 H 0.269 0.731 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 15.020 -4.552 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.158 0.842 4 C -0.027 4.027 5 N -0.341 5.341 6 C 0.145 3.855 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.794 3.206 12 H -0.205 1.205 13 H -0.196 1.196 14 H -0.185 1.185 15 C 0.278 3.722 16 O -0.486 6.486 17 C -0.135 4.135 18 H 0.144 0.856 19 C -0.186 4.186 20 H 0.090 0.910 21 H 0.105 0.895 22 H 0.041 0.959 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.012 0.988 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.975 14.318 -4.681 15.355 hybrid contribution -0.376 -1.287 0.462 1.418 sum -3.351 13.031 -4.219 14.101 Atomic orbital electron populations 1.21861 0.93779 1.00725 1.03578 1.22297 0.96906 1.00233 0.90736 0.84172 1.22436 1.01731 0.80306 0.98263 1.48697 1.69023 1.09577 1.06779 1.18689 0.95907 0.82288 0.88612 1.21686 0.93411 1.12383 1.31156 0.92930 1.25902 1.01220 0.96833 0.95173 1.70045 1.29807 1.22357 1.34444 0.85375 0.78921 0.78566 0.77735 1.20538 1.19613 1.18540 1.21909 0.75348 0.92152 0.82770 1.90588 1.53721 1.40174 1.64084 1.22073 1.02824 0.90955 0.97658 0.85604 1.21656 0.97296 1.03684 0.95945 0.90958 0.89470 0.95923 0.90870 0.89677 0.98842 0.95520 0.92198 0.87771 0.93444 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 7.89 71.98 0.57 -2.64 16 2 C -0.08 -1.90 3.65 -9.74 -0.04 -1.93 16 3 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.09 2.98 6.90 86.83 0.60 3.58 16 5 N -0.61 -27.65 2.92 -822.32 -2.40 -30.04 16 6 C 0.27 14.99 5.69 85.63 0.49 15.48 16 7 C -0.55 -32.60 9.39 25.60 0.24 -32.36 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.47 5.46 84.66 0.46 0.93 16 10 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 11 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 15 C 0.49 21.92 7.45 87.90 0.65 22.57 16 16 O -0.60 -33.48 17.43 -3.04 -0.05 -33.53 16 17 C -0.11 -3.25 3.44 -10.80 -0.04 -3.29 16 18 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 19 C -0.13 -3.25 7.98 71.98 0.57 -2.68 16 20 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.09 1.47 7.17 -2.38 -0.02 1.45 16 22 H 0.02 0.68 7.50 -2.39 -0.02 0.66 16 23 H 0.07 2.37 7.91 -2.38 -0.02 2.35 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H -0.01 -0.42 7.92 -2.39 -0.02 -0.44 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.10 1.71 7.86 -2.39 -0.02 1.69 16 29 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.04 1.30 6.63 -2.39 -0.02 1.28 16 Total: -1.00 -76.15 252.30 4.48 -71.67 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: 1.10 Total: 1.26 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 3.51 Total: -0.34 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -2.11 Total: -86.60 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.05 Total: -33.53 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.15 4.48 -71.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307024485.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.081 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds