Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.85876 * 2 1 4 4 C 1.54637 * 110.96658 * 236.17430 * 2 1 3 5 5 H 1.08999 * 110.48058 * 148.00102 * 4 2 1 6 6 C 1.53003 * 110.48787 * 25.48875 * 4 2 1 7 7 C 1.51278 * 104.19202 * 266.67504 * 4 2 1 8 8 O 1.21298 * 124.93939 * 163.78034 * 7 4 2 9 9 N 1.34417 * 110.12229 * 343.75318 * 7 4 2 10 10 C 1.37092 * 124.35606 * 179.59308 * 9 7 4 11 11 H 1.08004 * 119.99355 * 0.18837 * 10 9 7 12 12 C 1.38941 * 120.00336 * 180.18837 * 10 9 7 13 13 N 1.31417 * 120.00017 * 8.48902 * 12 10 9 14 14 Si 1.86799 * 120.00170 * 188.48573 * 12 10 9 15 15 H 1.48502 * 109.47208 * 90.00192 * 14 12 10 16 16 H 1.48501 * 109.47294 * 210.00520 * 14 12 10 17 17 H 1.48499 * 109.47136 * 330.00151 * 14 12 10 18 18 C 1.46762 * 111.29731 * 359.58746 * 9 7 4 19 19 H 1.08996 * 110.24780 * 136.01589 * 18 9 7 20 20 C 1.53002 * 110.32255 * 257.98299 * 18 9 7 21 21 H 1.08998 * 109.46723 * 296.20894 * 1 2 3 22 22 H 1.09006 * 109.46851 * 56.20379 * 1 2 3 23 23 H 1.08995 * 109.46876 * 176.20502 * 1 2 3 24 24 H 1.08998 * 109.46864 * 59.99878 * 6 4 2 25 25 H 1.08995 * 109.47074 * 179.97438 * 6 4 2 26 26 H 1.08998 * 109.46875 * 300.00012 * 6 4 2 27 27 H 0.96996 * 119.99586 * 179.97438 * 13 12 10 28 28 H 1.08998 * 109.47422 * 177.32082 * 20 18 9 29 29 H 1.09003 * 109.46846 * 297.31987 * 20 18 9 30 30 H 1.09001 * 109.47359 * 57.31762 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9181 1.0185 0.0000 4 6 2.0834 -0.8038 -1.1996 5 1 3.0284 -0.3801 -1.5392 6 6 1.0669 -0.8275 -2.3429 7 6 2.2955 -2.1960 -0.6470 8 8 2.4526 -3.1936 -1.3188 9 7 2.2853 -2.1666 0.6969 10 6 2.4436 -3.2692 1.4960 11 1 2.5915 -4.2420 1.0508 12 6 2.4139 -3.1352 2.8786 13 7 2.0696 -1.9885 3.4204 14 14 2.8632 -4.5850 3.9675 15 1 4.3217 -4.5621 4.2454 16 1 2.1140 -4.4945 5.2464 17 1 2.5109 -5.8512 3.2761 18 6 2.0829 -0.8024 1.1987 19 1 1.3618 -0.8042 2.0160 20 6 3.4117 -0.2060 1.6672 21 1 -0.3633 0.4539 0.9220 22 1 -0.3633 0.5717 -0.8541 23 1 -0.3633 -1.0254 -0.0680 24 1 0.8594 0.1927 -2.6657 25 1 1.4733 -1.3970 -3.1786 26 1 0.1441 -1.2946 -1.9990 27 1 2.0484 -1.8951 4.3856 28 1 3.2540 0.8224 1.9923 29 1 3.8009 -0.7941 2.4984 30 1 4.1270 -0.2214 0.8449 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307378803.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -57.296444 kcal Electronic energy + Delta-G solvation = -13395.473895 eV Core-core repulsion = 11189.806844 eV Total energy + Delta-G solvation = -2205.667050 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43117 -37.43549 -35.99582 -33.29854 -31.65839 -29.74730 -27.74753 -25.47023 -23.85029 -21.42733 -20.24748 -18.94343 -17.15364 -16.79141 -15.92002 -15.77374 -15.21268 -14.60499 -14.35876 -14.12005 -13.68079 -13.47672 -13.10201 -12.88469 -12.80654 -12.57424 -12.44586 -12.20022 -12.09505 -11.84815 -11.50865 -11.16315 -10.93417 -10.18135 -9.74924 -8.23988 -5.91718 1.34584 1.39513 1.50680 2.01356 2.25820 3.13546 3.24195 3.68686 3.78591 4.07499 4.31886 4.53551 4.65117 4.73545 4.82027 4.90880 4.98216 5.00791 5.13553 5.19055 5.24881 5.33019 5.37711 5.53198 5.66563 5.76455 6.01098 6.57617 7.15545 7.41190 8.12411 8.67614 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044733 B = 0.014063 C = 0.012211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.779004 B = 1990.551549 C = 2292.450247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 H 0.118 0.882 4 C -0.109 4.109 5 H 0.100 0.900 6 C -0.121 4.121 7 C 0.421 3.579 8 O -0.647 6.647 9 N -0.449 5.449 10 C -0.343 4.343 11 H 0.068 0.932 12 C 0.005 3.995 13 N -0.881 5.881 14 Si 0.988 3.012 15 H -0.272 1.272 16 H -0.267 1.267 17 H -0.278 1.278 18 C 0.131 3.869 19 H 0.108 0.892 20 C -0.128 4.128 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.024 0.976 24 H 0.096 0.904 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.274 0.726 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 8.476 -1.447 8.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 H 0.136 0.864 4 C -0.130 4.130 5 H 0.118 0.882 6 C -0.179 4.179 7 C 0.210 3.790 8 O -0.537 6.537 9 N -0.166 5.166 10 C -0.471 4.471 11 H 0.086 0.914 12 C -0.197 4.197 13 N -0.519 5.519 14 Si 0.812 3.188 15 H -0.197 1.197 16 H -0.191 1.191 17 H -0.204 1.204 18 C 0.028 3.972 19 H 0.126 0.874 20 C -0.186 4.186 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.043 0.957 24 H 0.115 0.885 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.865 8.031 -1.453 8.372 hybrid contribution 0.450 -1.207 0.634 1.435 sum -1.415 6.825 -0.819 7.018 Atomic orbital electron populations 1.21742 0.93570 1.00590 1.02884 1.22454 0.97067 0.99710 0.92422 0.86425 1.21823 1.01467 0.92430 0.97313 0.88159 1.21588 0.97379 1.03034 0.95888 1.21378 0.82850 0.91733 0.83008 1.90435 1.59380 1.39805 1.64069 1.44333 1.59489 1.07826 1.04921 1.19560 1.50342 0.88147 0.89013 0.91363 1.25884 0.95865 1.00687 0.97299 1.69921 1.45087 1.24639 1.12295 0.85016 0.78568 0.77717 0.77528 1.19731 1.19104 1.20355 1.22100 0.98988 0.79599 0.96542 0.87413 1.21881 0.96449 1.00390 0.99838 0.91765 0.89501 0.95656 0.88494 0.93656 0.93420 0.91537 0.90521 0.93905 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 7.89 71.98 0.57 -3.41 16 2 C -0.10 -3.31 3.17 -9.73 -0.03 -3.34 16 3 H 0.12 3.12 7.89 -2.39 -0.02 3.10 16 4 C -0.11 -4.14 3.43 -10.80 -0.04 -4.18 16 5 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 6 C -0.12 -3.88 8.01 71.98 0.58 -3.30 16 7 C 0.42 22.21 7.40 87.90 0.65 22.86 16 8 O -0.65 -39.59 17.43 -3.08 -0.05 -39.64 16 9 N -0.45 -24.15 2.71 -609.74 -1.65 -25.80 16 10 C -0.34 -20.02 9.87 84.04 0.83 -19.19 16 11 H 0.07 4.29 7.68 -2.91 -0.02 4.27 16 12 C 0.00 0.24 5.20 84.92 0.44 0.68 16 13 N -0.88 -44.67 8.60 21.66 0.19 -44.48 16 14 Si 0.99 42.57 29.56 68.60 2.03 44.59 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.13 5.77 2.21 45.44 0.10 5.87 16 19 H 0.11 5.20 5.75 -2.39 -0.01 5.19 16 20 C -0.13 -5.18 9.05 71.98 0.65 -4.52 16 21 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.09 2.03 7.27 -2.38 -0.02 2.01 16 23 H 0.02 0.91 7.42 -2.39 -0.02 0.89 16 24 H 0.10 2.23 7.89 -2.39 -0.02 2.21 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.61 6.59 -2.39 -0.02 1.59 16 27 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.04 1.98 6.60 -2.39 -0.02 1.97 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -67.65 241.95 5.37 -62.28 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.11 Total: 11.59 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.75 Total: -8.54 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -1.47 Total: -70.29 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.05 Total: -39.64 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -67.65 5.37 -62.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307378803.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.987 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds