Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.43587 * 2 1 4 4 C 1.54630 * 110.49169 * 237.31412 * 2 1 3 5 5 C 1.54654 * 101.68836 * 216.31177 * 4 2 1 6 6 N 1.46765 * 105.38378 * 25.76460 * 5 4 2 7 7 C 1.46499 * 124.35294 * 162.85560 * 6 5 4 8 8 C 1.52999 * 109.47299 * 269.72806 * 7 6 5 9 9 C 1.50695 * 109.47057 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.34425 * 111.30057 * 342.59223 * 6 5 4 18 18 O 1.21280 * 124.94392 * 180.65265 * 17 6 5 19 19 H 1.09003 * 109.47523 * 298.91343 * 1 2 3 20 20 H 1.09000 * 109.47164 * 58.91469 * 1 2 3 21 21 H 1.09001 * 109.46887 * 178.91063 * 1 2 3 22 22 H 1.09003 * 110.96529 * 334.64180 * 4 2 1 23 23 H 1.08997 * 110.97123 * 98.36465 * 4 2 1 24 24 H 1.09002 * 110.39756 * 266.74212 * 5 4 2 25 25 H 1.09000 * 110.18694 * 144.67797 * 5 4 2 26 26 H 1.09002 * 109.47567 * 149.72578 * 7 6 5 27 27 H 1.08998 * 109.46751 * 29.72645 * 7 6 5 28 28 H 1.09002 * 109.46997 * 59.99424 * 8 7 6 29 29 H 1.09000 * 109.46625 * 299.99849 * 8 7 6 30 30 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0713 -0.7822 -1.2191 5 6 3.3241 -1.4648 -0.6222 6 7 3.0563 -1.5807 0.8161 7 6 3.7858 -2.4696 1.7239 8 6 3.0826 -3.8271 1.7830 9 6 3.8334 -4.7415 2.7162 10 1 4.7234 -4.3899 3.2168 11 6 3.3840 -6.0272 2.9310 12 7 2.2999 -6.4553 2.3218 13 14 4.3150 -7.1611 4.0872 14 1 3.7815 -7.0099 5.4649 15 1 5.7571 -6.8068 4.0733 16 1 4.1467 -8.5680 3.6429 17 6 2.0594 -0.7623 1.1947 18 8 1.6445 -0.6514 2.3290 19 1 -0.3634 0.4969 0.8996 20 1 -0.3633 0.5306 -0.8801 21 1 -0.3633 -1.0275 -0.0195 22 1 1.3462 -1.5203 -1.5622 23 1 2.3465 -0.1041 -2.0268 24 1 4.2087 -0.8512 -0.7929 25 1 3.4592 -2.4532 -1.0615 26 1 3.8110 -2.0297 2.7209 27 1 4.8045 -2.6037 1.3601 28 1 3.0574 -4.2669 0.7859 29 1 2.0639 -3.6929 2.1467 30 1 1.8162 -5.8664 1.7217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = -56.098442 kcal Electronic energy + Delta-G solvation = -12589.308375 eV Core-core repulsion = 10383.693274 eV Total energy + Delta-G solvation = -2205.615101 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10222 -36.01067 -34.55484 -32.86161 -29.99927 -28.14451 -25.21262 -24.02435 -21.92996 -20.98962 -18.71061 -16.91682 -16.45411 -15.87933 -14.77345 -13.80792 -13.77222 -13.65161 -13.41080 -12.80995 -12.76362 -12.32528 -11.99235 -11.69444 -11.58833 -11.04103 -10.82723 -10.79002 -10.31948 -10.10773 -10.08326 -9.27783 -8.67034 -8.32876 -8.07128 -6.37832 -4.07200 3.01703 3.43905 3.48045 3.54423 3.63467 4.47360 4.55551 4.58793 4.82188 5.15984 5.37536 5.40697 5.47320 5.63553 5.72364 5.85064 5.88712 5.99465 6.07516 6.23912 6.36233 6.66535 6.91846 7.30445 7.46778 7.72300 8.15751 8.43874 8.65491 8.85736 9.65868 11.03186 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058761 B = 0.008017 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.392651 B = 3491.665936 C = 3539.935381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 H 0.102 0.898 4 C -0.128 4.128 5 C 0.100 3.900 6 N -0.614 5.614 7 C 0.134 3.866 8 C -0.001 4.001 9 C -0.604 4.604 10 H 0.051 0.949 11 C 0.016 3.984 12 N -0.911 5.911 13 Si 1.074 2.926 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.284 1.284 17 C 0.512 3.488 18 O -0.534 6.534 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.008 0.992 29 H 0.011 0.989 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 11.222 -8.582 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.149 4.149 3 H 0.120 0.880 4 C -0.166 4.166 5 C -0.023 4.023 6 N -0.348 5.348 7 C 0.014 3.986 8 C -0.039 4.039 9 C -0.642 4.642 10 H 0.069 0.931 11 C -0.188 4.188 12 N -0.547 5.547 13 Si 0.902 3.098 14 H -0.214 1.214 15 H -0.214 1.214 16 H -0.210 1.210 17 C 0.299 3.701 18 O -0.411 6.411 19 H 0.083 0.917 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.030 0.970 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.612 9.691 -7.283 12.138 hybrid contribution 0.088 1.504 -0.739 1.678 sum 0.700 11.195 -8.022 13.790 Atomic orbital electron populations 1.21607 0.92539 1.02668 1.02248 1.21940 0.98125 1.00313 0.94516 0.87963 1.22732 0.97353 0.99590 0.96937 1.22060 0.97478 1.01483 0.81324 1.48581 1.35843 1.41166 1.09173 1.21629 0.94383 0.90754 0.91829 1.19529 0.96455 0.91049 0.96859 1.21952 1.13276 0.99566 1.29431 0.93063 1.25885 0.96821 0.97234 0.98873 1.70746 1.16580 1.39524 1.27836 0.83481 0.74938 0.75764 0.75626 1.21365 1.21418 1.20956 1.20778 0.79794 0.80028 0.89530 1.90688 1.61186 1.67150 1.22093 0.91671 0.91965 0.92224 0.89919 0.89605 0.91539 0.90322 0.91014 0.91503 0.97410 0.97022 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.08 37.16 0.34 -1.31 16 2 C -0.13 -1.70 3.53 -90.63 -0.32 -2.02 16 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.13 -1.42 6.71 -25.00 -0.17 -1.59 16 5 C 0.10 1.37 7.36 -3.03 -0.02 1.34 16 6 N -0.61 -11.54 2.93 -172.30 -0.51 -12.05 16 7 C 0.13 2.97 5.87 -4.04 -0.02 2.94 16 8 C 0.00 -0.03 4.61 -27.89 -0.13 -0.16 16 9 C -0.60 -17.69 9.11 -34.44 -0.31 -18.00 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 12 N -0.91 -28.68 13.65 55.43 0.76 -27.92 16 13 Si 1.07 25.84 29.90 -169.99 -5.08 20.76 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.51 9.85 7.45 -10.85 -0.08 9.77 16 18 O -0.53 -12.62 17.43 5.56 0.10 -12.52 16 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 22 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 23 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.68 7.92 -51.93 -0.41 1.27 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 29 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 16 30 H 0.27 8.49 7.22 -40.82 -0.29 8.20 16 LS Contribution 256.33 15.07 3.86 3.86 Total: -1.00 -34.42 256.33 -6.22 -40.64 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.53 Total: -4.12 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -0.82 Total: -8.64 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.25 Total: -39.97 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.10 Total: -12.52 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -34.42 -6.22 -40.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.462 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds