Wall clock time and date at job start Mon Mar 30 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.43587 * 2 1 4 4 C 1.54630 * 110.49169 * 237.31412 * 2 1 3 5 5 C 1.54654 * 101.68836 * 216.31177 * 4 2 1 6 6 N 1.46765 * 105.38378 * 25.76460 * 5 4 2 7 7 C 1.46499 * 124.35294 * 162.85560 * 6 5 4 8 8 C 1.52999 * 109.47299 * 269.72806 * 7 6 5 9 9 C 1.50695 * 109.47057 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00538 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99661 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00186 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47297 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47261 * 330.00044 * 13 11 9 16 16 H 1.48500 * 109.47454 * 210.00037 * 13 11 9 17 17 C 1.34425 * 111.30057 * 342.59223 * 6 5 4 18 18 O 1.21280 * 124.94392 * 180.65265 * 17 6 5 19 19 H 1.09003 * 109.47523 * 298.91343 * 1 2 3 20 20 H 1.09000 * 109.47164 * 58.91469 * 1 2 3 21 21 H 1.09001 * 109.46887 * 178.91063 * 1 2 3 22 22 H 1.09003 * 110.96529 * 334.64180 * 4 2 1 23 23 H 1.08997 * 110.97123 * 98.36465 * 4 2 1 24 24 H 1.09002 * 110.39756 * 266.74212 * 5 4 2 25 25 H 1.09000 * 110.18694 * 144.67797 * 5 4 2 26 26 H 1.09002 * 109.47567 * 149.72578 * 7 6 5 27 27 H 1.08998 * 109.46751 * 29.72645 * 7 6 5 28 28 H 1.09002 * 109.46997 * 59.99424 * 8 7 6 29 29 H 1.09000 * 109.46625 * 299.99849 * 8 7 6 30 30 H 0.97001 * 119.99697 * 359.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0713 -0.7822 -1.2191 5 6 3.3241 -1.4648 -0.6222 6 7 3.0563 -1.5807 0.8161 7 6 3.7858 -2.4696 1.7239 8 6 3.0826 -3.8271 1.7830 9 6 3.8334 -4.7415 2.7162 10 1 4.7234 -4.3899 3.2168 11 6 3.3840 -6.0272 2.9310 12 7 2.2999 -6.4553 2.3218 13 14 4.3150 -7.1611 4.0872 14 1 3.7815 -7.0099 5.4649 15 1 5.7571 -6.8068 4.0733 16 1 4.1467 -8.5680 3.6429 17 6 2.0594 -0.7623 1.1947 18 8 1.6445 -0.6514 2.3290 19 1 -0.3634 0.4969 0.8996 20 1 -0.3633 0.5306 -0.8801 21 1 -0.3633 -1.0275 -0.0195 22 1 1.3462 -1.5203 -1.5622 23 1 2.3465 -0.1041 -2.0268 24 1 4.2087 -0.8512 -0.7929 25 1 3.4592 -2.4532 -1.0615 26 1 3.8110 -2.0297 2.7209 27 1 4.8045 -2.6037 1.3601 28 1 3.0574 -4.2669 0.7859 29 1 2.0639 -3.6929 2.1467 30 1 1.8162 -5.8664 1.7217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509166.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:42 Heat of formation + Delta-G solvation = -79.643063 kcal Electronic energy + Delta-G solvation = -12590.329347 eV Core-core repulsion = 10383.693274 eV Total energy + Delta-G solvation = -2206.636073 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.49008 -37.55555 -36.37665 -34.63827 -31.68083 -29.53369 -26.88354 -25.60273 -23.75960 -22.29743 -20.17193 -19.08142 -17.72594 -17.49857 -16.21741 -15.68336 -15.36949 -14.93119 -14.80282 -14.73821 -14.23825 -14.00689 -13.34336 -13.08757 -12.84460 -12.68219 -12.42724 -12.12760 -11.96114 -11.90304 -11.80497 -10.97472 -10.68021 -10.61466 -9.67093 -8.78216 -6.49580 1.49698 1.53996 1.59858 1.77843 2.10865 2.54107 3.08617 3.32083 3.56166 3.88273 4.11056 4.17905 4.32139 4.41864 4.53571 4.63041 4.70496 4.79482 4.88703 5.04001 5.04926 5.16272 5.18970 5.27245 5.53764 5.89732 6.07457 6.23086 6.44698 7.14529 7.34609 8.62313 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058761 B = 0.008017 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.392651 B = 3491.665936 C = 3539.935381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.134 0.866 4 C -0.113 4.113 5 C 0.090 3.910 6 N -0.623 5.623 7 C 0.146 3.854 8 C 0.008 3.992 9 C -0.623 4.623 10 H 0.058 0.942 11 C -0.039 4.039 12 N -0.934 5.934 13 Si 1.125 2.875 14 H -0.276 1.276 15 H -0.262 1.262 16 H -0.278 1.278 17 C 0.491 3.509 18 O -0.594 6.594 19 H 0.048 0.952 20 H 0.104 0.896 21 H 0.038 0.962 22 H 0.080 0.920 23 H 0.135 0.865 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.091 0.909 28 H -0.002 1.002 29 H -0.033 1.033 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 12.203 -10.102 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 H 0.151 0.849 4 C -0.151 4.151 5 C -0.032 4.032 6 N -0.355 5.355 7 C 0.024 3.976 8 C -0.030 4.030 9 C -0.661 4.661 10 H 0.077 0.923 11 C -0.237 4.237 12 N -0.571 5.571 13 Si 0.945 3.055 14 H -0.202 1.202 15 H -0.186 1.186 16 H -0.204 1.204 17 C 0.280 3.720 18 O -0.475 6.475 19 H 0.068 0.932 20 H 0.122 0.878 21 H 0.058 0.942 22 H 0.099 0.901 23 H 0.153 0.847 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.109 0.891 28 H 0.016 0.984 29 H -0.014 1.014 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.876 10.705 -8.864 14.024 hybrid contribution -0.323 1.227 -0.294 1.302 sum 1.553 11.932 -9.158 15.121 Atomic orbital electron populations 1.21639 0.91988 1.01839 1.03473 1.22026 0.98419 1.01115 0.92150 0.84865 1.22811 0.95612 0.99786 0.96851 1.22474 1.00313 1.02421 0.77955 1.48735 1.35463 1.40081 1.11209 1.21194 0.95310 0.88743 0.92318 1.19379 0.94346 0.93715 0.95519 1.22411 1.13647 1.00272 1.29729 0.92325 1.27625 0.96775 0.99544 0.99718 1.70896 1.17884 1.39407 1.28908 0.82859 0.75045 0.73847 0.73762 1.20172 1.18592 1.20377 1.22052 0.79239 0.80163 0.90514 1.90638 1.62774 1.69089 1.25011 0.93241 0.87767 0.94245 0.90144 0.84667 0.88219 0.90800 0.93130 0.89104 0.98376 1.01428 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.08 71.98 0.65 -2.38 16 2 C -0.12 -2.79 3.53 -10.80 -0.04 -2.83 16 3 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 4 C -0.11 -2.05 6.71 31.71 0.21 -1.84 16 5 C 0.09 2.21 7.36 86.89 0.64 2.85 16 6 N -0.62 -23.24 2.93 -817.62 -2.40 -25.64 16 7 C 0.15 6.58 5.87 86.38 0.51 7.09 16 8 C 0.01 0.47 4.61 29.85 0.14 0.61 16 9 C -0.62 -37.12 9.11 25.60 0.23 -36.88 16 10 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 11 C -0.04 -2.37 5.46 84.65 0.46 -1.91 16 12 N -0.93 -60.28 13.65 21.45 0.29 -59.99 16 13 Si 1.13 51.48 29.90 68.60 2.05 53.53 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 C 0.49 19.00 7.45 87.90 0.65 19.65 16 18 O -0.59 -29.35 17.43 -3.03 -0.05 -29.41 16 19 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 20 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 22 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 23 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.05 2.46 7.92 -2.39 -0.02 2.44 16 27 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 28 H 0.00 -0.12 8.01 -2.39 -0.02 -0.13 16 29 H -0.03 -2.09 8.01 -2.39 -0.02 -2.11 16 30 H 0.25 16.67 7.22 -92.71 -0.67 16.00 16 Total: -1.00 -79.10 256.33 4.55 -74.55 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.20 Total: 2.59 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 3.46 Total: -15.64 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.10 Total: -85.62 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -79.10 4.55 -74.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509166.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.094 kcal (2) G-P(sol) polarization free energy of solvation -79.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds