Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.43801 * 2 1 4 4 C 1.54631 * 110.48501 * 122.68525 * 2 1 3 5 5 C 1.54662 * 101.68344 * 93.66125 * 4 2 1 6 6 N 1.46764 * 105.38281 * 25.76557 * 5 4 2 7 7 C 1.46499 * 124.34671 * 162.85061 * 6 5 4 8 8 C 1.52997 * 109.47555 * 269.72633 * 7 6 5 9 9 C 1.50694 * 109.47460 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00472 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.34418 * 111.30143 * 342.59078 * 6 5 4 18 18 O 1.21277 * 124.93822 * 180.69222 * 17 6 5 19 19 H 1.08997 * 109.47783 * 181.08962 * 1 2 3 20 20 H 1.09003 * 109.46694 * 301.09362 * 1 2 3 21 21 H 1.09007 * 109.46906 * 61.08027 * 1 2 3 22 22 H 1.08996 * 110.97089 * 211.99276 * 4 2 1 23 23 H 1.09001 * 110.97127 * 335.72195 * 4 2 1 24 24 H 1.08996 * 110.40042 * 266.73814 * 5 4 2 25 25 H 1.09000 * 110.18299 * 144.68523 * 5 4 2 26 26 H 1.09003 * 109.47334 * 149.72648 * 7 6 5 27 27 H 1.08999 * 109.47608 * 29.72985 * 7 6 5 28 28 H 1.09005 * 109.46800 * 60.00640 * 8 7 6 29 29 H 1.08998 * 109.47382 * 300.00439 * 8 7 6 30 30 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0711 -0.7822 1.2192 5 6 2.2713 -2.1945 0.6214 6 7 2.4755 -1.9833 -0.8166 7 6 3.0529 -2.9777 -1.7243 8 6 4.5709 -2.7954 -1.7816 9 6 5.1648 -3.8179 -2.7158 10 1 4.5237 -4.5272 -3.2182 11 6 6.5267 -3.8487 -2.9285 12 7 7.3074 -2.9853 -2.3164 13 14 7.2630 -5.1166 -4.0860 14 1 8.7362 -4.9395 -4.1416 15 1 6.9461 -6.4807 -3.5922 16 1 6.6916 -4.9369 -5.4449 17 6 2.0594 -0.7623 -1.1947 18 8 2.1018 -0.3344 -2.3286 19 1 -0.3634 -1.0274 0.0195 20 1 -0.3633 0.5307 0.8801 21 1 -0.3633 0.4970 -0.8996 22 1 3.0162 -0.3626 1.5637 23 1 1.3385 -0.8027 2.0260 24 1 1.3862 -2.8077 0.7906 25 1 3.1489 -2.6682 1.0614 26 1 2.6333 -2.8462 -2.7217 27 1 2.8206 -3.9790 -1.3617 28 1 4.9905 -2.9271 -0.7842 29 1 4.8032 -1.7941 -2.1443 30 1 8.2656 -3.0072 -2.4657 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307509167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -51.896570 kcal Electronic energy + Delta-G solvation = -12546.191859 eV Core-core repulsion = 10340.758965 eV Total energy + Delta-G solvation = -2205.432894 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.05347 -35.96449 -34.34245 -32.61320 -29.96418 -28.23053 -25.43029 -24.46108 -21.69504 -20.71537 -18.71615 -16.70701 -15.87218 -15.57479 -15.04046 -14.44250 -13.80692 -13.57227 -13.02343 -12.70880 -12.53544 -12.22364 -12.09909 -11.97266 -11.28996 -10.92411 -10.81506 -10.78699 -10.68302 -9.96201 -9.85173 -9.32296 -9.06045 -8.36047 -7.97814 -6.01237 -4.04879 3.10644 3.33744 3.37877 3.40249 3.63850 4.46421 4.53524 4.63802 4.92888 5.17977 5.34710 5.40162 5.53875 5.62118 5.78188 5.90756 5.93707 6.01687 6.12418 6.22575 6.49380 6.83459 7.04902 7.54958 7.69057 7.89092 7.98894 8.35072 8.73994 9.01837 9.59035 11.10226 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.068604 B = 0.007759 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.042335 B = 3607.970055 C = 3695.607145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 H 0.100 0.900 4 C -0.129 4.129 5 C 0.101 3.899 6 N -0.611 5.611 7 C 0.127 3.873 8 C 0.012 3.988 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.896 3.104 14 H -0.287 1.287 15 H -0.276 1.276 16 H -0.276 1.276 17 C 0.514 3.486 18 O -0.537 6.537 19 H 0.057 0.943 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.017 0.983 29 H 0.020 0.980 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.194 2.690 8.656 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.151 4.151 3 H 0.118 0.882 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.344 5.344 7 C 0.007 3.993 8 C -0.026 4.026 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.724 3.276 14 H -0.212 1.212 15 H -0.202 1.202 16 H -0.201 1.201 17 C 0.301 3.699 18 O -0.414 6.414 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.945 2.885 8.019 13.872 hybrid contribution 0.640 -0.725 -0.534 1.105 sum -10.305 2.160 7.485 12.918 Atomic orbital electron populations 1.21597 0.92595 1.02301 1.02413 1.21959 0.97658 1.00835 0.94631 0.88157 1.22707 1.02222 0.94854 0.96894 1.22045 1.01628 0.97153 0.81411 1.48540 1.60893 1.15833 1.09143 1.21791 0.97151 0.88729 0.91661 1.19399 0.88037 0.97850 0.97310 1.21063 0.92251 1.16194 1.26716 0.92516 1.25008 0.97251 0.95966 0.96062 1.69969 1.04481 1.35945 1.42819 0.86596 0.77941 0.81672 0.81436 1.21240 1.20185 1.20135 1.20711 0.77395 0.82393 0.89433 1.90688 1.56767 1.71740 1.22183 0.92375 0.91726 0.91925 0.89983 0.89598 0.91703 0.90212 0.91191 0.91677 0.96470 0.96113 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 9.17 37.16 0.34 -1.09 16 2 C -0.13 -1.75 3.53 -90.63 -0.32 -2.07 16 3 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 4 C -0.13 -1.45 6.72 -25.00 -0.17 -1.62 16 5 C 0.10 1.39 7.35 -3.02 -0.02 1.37 16 6 N -0.61 -11.51 2.93 -172.30 -0.51 -12.02 16 7 C 0.13 2.78 5.87 -4.04 -0.02 2.75 16 8 C 0.01 0.32 5.30 -27.89 -0.15 0.17 16 9 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 13 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.51 9.98 7.34 -10.86 -0.08 9.90 16 18 O -0.54 -12.83 17.59 5.56 0.10 -12.73 16 19 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.07 1.62 7.92 -51.93 -0.41 1.20 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 257.81 15.07 3.89 3.89 Total: -1.00 -33.76 257.81 -6.23 -39.99 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -4.59 Total: -4.99 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.83 Total: -4.40 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.23 Total: -38.69 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.10 Total: -12.73 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.76 -6.23 -39.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.903 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds