Wall clock time and date at job start Mon Mar 30 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.43801 * 2 1 4 4 C 1.54631 * 110.48501 * 122.68525 * 2 1 3 5 5 C 1.54662 * 101.68344 * 93.66125 * 4 2 1 6 6 N 1.46764 * 105.38281 * 25.76557 * 5 4 2 7 7 C 1.46499 * 124.34671 * 162.85061 * 6 5 4 8 8 C 1.52997 * 109.47555 * 269.72633 * 7 6 5 9 9 C 1.50694 * 109.47460 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00179 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00472 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00608 * 179.97438 * 11 9 8 14 14 H 1.48490 * 109.47339 * 179.97438 * 13 11 9 15 15 H 1.48493 * 109.47239 * 300.00306 * 13 11 9 16 16 H 1.48504 * 109.46636 * 59.99865 * 13 11 9 17 17 C 1.34418 * 111.30143 * 342.59078 * 6 5 4 18 18 O 1.21277 * 124.93822 * 180.69222 * 17 6 5 19 19 H 1.08997 * 109.47783 * 181.08962 * 1 2 3 20 20 H 1.09003 * 109.46694 * 301.09362 * 1 2 3 21 21 H 1.09007 * 109.46906 * 61.08027 * 1 2 3 22 22 H 1.08996 * 110.97089 * 211.99276 * 4 2 1 23 23 H 1.09001 * 110.97127 * 335.72195 * 4 2 1 24 24 H 1.08996 * 110.40042 * 266.73814 * 5 4 2 25 25 H 1.09000 * 110.18299 * 144.68523 * 5 4 2 26 26 H 1.09003 * 109.47334 * 149.72648 * 7 6 5 27 27 H 1.08999 * 109.47608 * 29.72985 * 7 6 5 28 28 H 1.09005 * 109.46800 * 60.00640 * 8 7 6 29 29 H 1.08998 * 109.47382 * 300.00439 * 8 7 6 30 30 H 0.97005 * 119.99661 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0711 -0.7822 1.2192 5 6 2.2713 -2.1945 0.6214 6 7 2.4755 -1.9833 -0.8166 7 6 3.0529 -2.9777 -1.7243 8 6 4.5709 -2.7954 -1.7816 9 6 5.1648 -3.8179 -2.7158 10 1 4.5237 -4.5272 -3.2182 11 6 6.5267 -3.8487 -2.9285 12 7 7.3074 -2.9853 -2.3164 13 14 7.2630 -5.1166 -4.0860 14 1 8.7362 -4.9395 -4.1416 15 1 6.9461 -6.4807 -3.5922 16 1 6.6916 -4.9369 -5.4449 17 6 2.0594 -0.7623 -1.1947 18 8 2.1018 -0.3344 -2.3286 19 1 -0.3634 -1.0274 0.0195 20 1 -0.3633 0.5307 0.8801 21 1 -0.3633 0.4970 -0.8996 22 1 3.0162 -0.3626 1.5637 23 1 1.3385 -0.8027 2.0260 24 1 1.3862 -2.8077 0.7906 25 1 3.1489 -2.6682 1.0614 26 1 2.6333 -2.8462 -2.7217 27 1 2.8206 -3.9790 -1.3617 28 1 4.9905 -2.9271 -0.7842 29 1 4.8032 -1.7941 -2.1443 30 1 8.2656 -3.0072 -2.4657 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307509167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:44 Heat of formation + Delta-G solvation = -74.860721 kcal Electronic energy + Delta-G solvation = -12547.187660 eV Core-core repulsion = 10340.758965 eV Total energy + Delta-G solvation = -2206.428695 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.44480 -37.50755 -36.09446 -34.46636 -31.66195 -29.54811 -27.10786 -25.88936 -23.46351 -22.06324 -20.22072 -18.71301 -17.49309 -16.92278 -16.59078 -16.33357 -15.15951 -15.02867 -14.61581 -14.26774 -14.06814 -13.75991 -13.27557 -13.11863 -12.97795 -12.82140 -12.59979 -12.01464 -11.94247 -11.76012 -11.68591 -11.45081 -10.67395 -10.59938 -9.57313 -8.25824 -6.39392 1.37862 1.42540 1.50126 1.61398 2.18429 2.41017 3.07435 3.38412 3.59983 4.01203 4.14935 4.28811 4.42409 4.52630 4.66839 4.71297 4.84369 4.86139 5.02237 5.11004 5.14447 5.29516 5.35732 5.43734 5.58386 5.80484 6.12709 6.32194 6.75795 7.22111 7.30778 8.86372 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.068604 B = 0.007759 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.042335 B = 3607.970055 C = 3695.607145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.114 4.114 5 C 0.091 3.909 6 N -0.619 5.619 7 C 0.139 3.861 8 C 0.024 3.976 9 C -0.549 4.549 10 H 0.067 0.933 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.973 3.027 14 H -0.282 1.282 15 H -0.258 1.258 16 H -0.270 1.270 17 C 0.493 3.507 18 O -0.598 6.598 19 H 0.062 0.938 20 H 0.102 0.898 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.133 0.867 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.002 0.998 29 H -0.029 1.029 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 1.681 10.115 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 H 0.123 0.877 4 C -0.152 4.152 5 C -0.030 4.030 6 N -0.351 5.351 7 C 0.018 3.982 8 C -0.014 4.014 9 C -0.587 4.587 10 H 0.085 0.915 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.796 3.204 14 H -0.207 1.207 15 H -0.183 1.183 16 H -0.195 1.195 17 C 0.283 3.717 18 O -0.479 6.479 19 H 0.081 0.919 20 H 0.121 0.879 21 H 0.065 0.935 22 H 0.099 0.901 23 H 0.151 0.849 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.020 0.980 29 H -0.011 1.011 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.129 1.864 9.531 15.538 hybrid contribution 1.009 -0.383 -0.961 1.445 sum -11.120 1.482 8.570 14.117 Atomic orbital electron populations 1.21624 0.90101 1.03091 1.03507 1.22015 0.99505 1.00274 0.92371 0.87669 1.22781 1.03495 0.92149 0.96748 1.22451 1.02935 0.99554 0.78103 1.48699 1.59951 1.15247 1.11179 1.21360 0.93654 0.91043 0.92171 1.19208 0.91686 0.94753 0.95783 1.21537 0.93069 1.16811 1.27304 0.91476 1.26060 0.97765 0.98236 0.97785 1.70115 1.04929 1.37862 1.44403 0.85384 0.76966 0.79164 0.78836 1.20678 1.18277 1.19522 1.21953 0.76610 0.82814 0.90364 1.90635 1.59173 1.72984 1.25147 0.91854 0.87893 0.93456 0.90067 0.84907 0.88397 0.90594 0.93153 0.89011 0.98012 1.01081 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.17 71.98 0.66 -1.69 16 2 C -0.12 -3.02 3.53 -10.80 -0.04 -3.05 16 3 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 4 C -0.11 -2.17 6.72 31.72 0.21 -1.95 16 5 C 0.09 2.28 7.35 86.90 0.64 2.92 16 6 N -0.62 -23.31 2.93 -817.63 -2.40 -25.71 16 7 C 0.14 6.24 5.87 86.38 0.51 6.75 16 8 C 0.02 1.33 5.30 29.85 0.16 1.49 16 9 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 10 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 11 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 12 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 13 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 C 0.49 19.45 7.34 87.90 0.65 20.10 16 18 O -0.60 -30.08 17.59 -3.02 -0.05 -30.13 16 19 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 20 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.13 1.37 7.90 -2.39 -0.02 1.35 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 2.42 7.92 -2.39 -0.02 2.40 16 27 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 29 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 30 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -77.45 257.81 4.44 -73.01 By element: Atomic # 1 Polarization: 0.05 SS G_CDS: 1.10 Total: 1.15 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: 3.48 Total: -7.09 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.11 Total: -84.05 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.05 Total: -30.13 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.45 4.44 -73.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307509167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.848 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds