Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 112.77681 * 2 1 4 4 C 1.53756 * 113.55393 * 130.86108 * 2 1 3 5 5 C 1.53495 * 83.25776 * 140.98710 * 4 2 1 6 6 C 1.53002 * 113.46448 * 218.98099 * 5 4 2 7 7 C 1.52997 * 113.46637 * 88.54382 * 5 4 2 8 8 N 1.47062 * 87.98642 * 333.76291 * 5 4 2 9 9 C 1.34777 * 136.05746 * 207.08806 * 8 5 4 10 10 O 1.21689 * 120.00325 * 359.97438 * 9 8 5 11 11 C 1.46380 * 120.00226 * 180.02562 * 9 8 5 12 12 H 1.08001 * 119.99821 * 10.06582 * 11 9 8 13 13 C 1.40046 * 120.00183 * 190.07104 * 11 9 8 14 14 N 1.30676 * 119.99992 * 191.89932 * 13 11 9 15 15 Si 1.86800 * 120.00064 * 12.17434 * 13 11 9 16 16 H 1.48497 * 109.46994 * 269.72562 * 15 13 11 17 17 H 1.48502 * 109.46818 * 29.72647 * 15 13 11 18 18 H 1.48498 * 109.47024 * 149.72598 * 15 13 11 19 19 H 1.09001 * 109.46859 * 171.27494 * 1 2 3 20 20 H 1.08999 * 109.46969 * 291.27307 * 1 2 3 21 21 H 1.08998 * 109.46799 * 51.27441 * 1 2 3 22 22 H 1.09007 * 114.39088 * 27.42221 * 4 2 1 23 23 H 1.09001 * 114.08765 * 254.53129 * 4 2 1 24 24 H 1.09003 * 109.46991 * 177.94106 * 6 5 4 25 25 H 1.08998 * 109.47306 * 297.94004 * 6 5 4 26 26 H 1.09003 * 109.47380 * 57.94677 * 6 5 4 27 27 H 1.08994 * 109.47410 * 302.05799 * 7 5 4 28 28 H 1.09000 * 109.47264 * 62.05961 * 7 5 4 29 29 H 1.09003 * 109.46787 * 182.05415 * 7 5 4 30 30 H 0.97000 * 119.99749 * 355.20540 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9520 1.0049 0.0000 4 6 2.1445 -0.9221 1.0660 5 6 3.1582 -1.2301 -0.0447 6 6 3.5753 -2.7012 -0.0980 7 6 4.3530 -0.2746 -0.0611 8 7 2.1158 -0.8811 -1.0215 9 6 1.8274 -1.2165 -2.2946 10 8 2.5400 -2.0002 -2.8938 11 6 0.6576 -0.6374 -2.9571 12 1 0.1205 0.1755 -2.4912 13 6 0.2349 -1.1375 -4.1951 14 7 -0.6534 -0.4830 -4.8953 15 14 0.9351 -2.7439 -4.8419 16 1 2.1459 -2.4644 -5.6548 17 1 1.2973 -3.6214 -3.6999 18 1 -0.0813 -3.4230 -5.6850 19 1 -0.3633 -1.0158 -0.1559 20 1 -0.3633 0.3729 0.9576 21 1 -0.3633 0.6429 -0.8017 22 1 1.5166 -1.7683 1.3453 23 1 2.5656 -0.3942 1.9216 24 1 4.2645 -2.8536 -0.9287 25 1 4.0663 -2.9738 0.8361 26 1 2.6923 -3.3244 -0.2397 27 1 3.9980 0.7493 -0.1777 28 1 4.9027 -0.3641 0.8759 29 1 5.0098 -0.5284 -0.8932 30 1 -1.0712 0.3115 -4.5277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307544518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -24.035320 kcal Electronic energy + Delta-G solvation = -13182.843160 eV Core-core repulsion = 10978.618420 eV Total energy + Delta-G solvation = -2204.224740 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94976 -36.39073 -32.87771 -31.83406 -29.16661 -27.19243 -27.01808 -25.49573 -21.31172 -20.33398 -18.21582 -16.86506 -15.44485 -15.07019 -14.41695 -13.80240 -13.46336 -13.12587 -12.74588 -12.50535 -12.37523 -12.08565 -11.81833 -11.46724 -11.00954 -10.95966 -10.92459 -10.60490 -10.50424 -9.91325 -9.61864 -9.13638 -8.86487 -7.92904 -7.48220 -6.92166 -4.82514 3.59742 3.64364 3.96355 4.15967 4.33841 4.57871 4.80033 5.23253 5.44062 5.49758 5.67752 5.69886 5.73245 5.88597 5.94590 5.96143 6.17464 6.20208 6.28860 6.31373 6.45828 6.58938 6.71917 6.88217 6.94714 7.81554 7.84839 8.30473 8.90890 9.32718 10.16789 10.38082 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.014420 C = 0.011895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.299485 B = 1941.271291 C = 2353.340496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.135 3.865 3 H 0.071 0.929 4 C -0.147 4.147 5 C 0.146 3.854 6 C -0.136 4.136 7 C -0.144 4.144 8 N -0.644 5.644 9 C 0.581 3.419 10 O -0.613 6.613 11 C -0.593 4.593 12 H 0.076 0.924 13 C 0.062 3.938 14 N -0.836 5.836 15 Si 1.118 2.882 16 H -0.288 1.288 17 H -0.276 1.276 18 H -0.320 1.320 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 0.535 11.555 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.185 4.185 5 C 0.060 3.940 6 C -0.194 4.194 7 C -0.203 4.203 8 N -0.381 5.381 9 C 0.393 3.607 10 O -0.505 6.505 11 C -0.629 4.629 12 H 0.094 0.906 13 C -0.155 4.155 14 N -0.464 5.464 15 Si 0.950 3.050 16 H -0.215 1.215 17 H -0.202 1.202 18 H -0.252 1.252 19 H 0.081 0.919 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.106 0.894 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.364 -0.857 9.737 10.704 hybrid contribution -0.053 1.482 1.358 2.011 sum 4.311 0.626 11.095 11.920 Atomic orbital electron populations 1.21951 0.94860 1.03089 1.00654 1.22240 0.94498 0.94142 0.86125 0.91088 1.23671 0.98698 1.00258 0.95865 1.21611 0.89998 0.94934 0.87479 1.21787 1.01902 0.94935 1.00787 1.21927 0.97594 0.99250 1.01531 1.49862 1.28386 1.47686 1.12150 1.18095 0.85975 0.80046 0.76611 1.90227 1.54834 1.42396 1.63049 1.22116 1.13586 1.20605 1.06626 0.90621 1.27047 0.93286 1.02989 0.92180 1.70637 1.22871 1.16541 1.36375 0.82658 0.73252 0.73895 0.75189 1.21525 1.20222 1.25154 0.91896 0.92977 0.91870 0.89360 0.90905 0.92069 0.92936 0.92317 0.92454 0.92162 0.92229 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.72 37.16 0.32 -2.26 16 2 C 0.13 2.42 4.23 -72.26 -0.31 2.11 16 3 H 0.07 1.20 7.28 -51.93 -0.38 0.82 16 4 C -0.15 -2.20 7.17 -26.08 -0.19 -2.39 16 5 C 0.15 2.63 1.59 -136.29 -0.22 2.41 16 6 C -0.14 -2.42 8.73 37.16 0.32 -2.09 16 7 C -0.14 -2.26 9.26 37.16 0.34 -1.91 16 8 N -0.64 -14.53 3.25 -163.73 -0.53 -15.06 16 9 C 0.58 16.13 7.58 -12.98 -0.10 16.03 16 10 O -0.61 -18.32 12.46 5.20 0.06 -18.25 16 11 C -0.59 -17.09 9.19 -35.63 -0.33 -17.41 16 12 H 0.08 2.14 5.73 -52.49 -0.30 1.84 16 13 C 0.06 1.83 5.52 -17.37 -0.10 1.73 16 14 N -0.84 -24.57 13.65 55.55 0.76 -23.81 16 15 Si 1.12 30.17 26.40 -169.99 -4.49 25.68 16 16 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 17 H -0.28 -7.64 6.44 56.52 0.36 -7.28 16 18 H -0.32 -8.24 7.11 56.52 0.40 -7.84 16 19 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 1.21 6.40 -51.93 -0.33 0.88 16 22 H 0.09 1.31 8.11 -51.92 -0.42 0.89 16 23 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 0.88 7.02 -51.93 -0.36 0.52 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.28 7.82 8.72 -40.82 -0.36 7.46 16 LS Contribution 246.76 15.07 3.72 3.72 Total: -1.00 -32.35 246.76 -5.08 -37.43 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: -4.37 Total: -5.93 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -0.24 Total: -3.78 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.23 Total: -38.87 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.06 Total: -18.25 kcal Atomic # 14 Polarization: 30.17 SS G_CDS: -4.49 Total: 25.68 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.35 -5.08 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307544518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.397 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds