Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 112.77681 * 2 1 4 4 C 1.53756 * 113.55393 * 130.86108 * 2 1 3 5 5 C 1.53495 * 83.25776 * 140.98710 * 4 2 1 6 6 C 1.53002 * 113.46448 * 218.98099 * 5 4 2 7 7 C 1.52997 * 113.46637 * 88.54382 * 5 4 2 8 8 N 1.47062 * 87.98642 * 333.76291 * 5 4 2 9 9 C 1.34777 * 136.05746 * 207.08806 * 8 5 4 10 10 O 1.21689 * 120.00325 * 359.97438 * 9 8 5 11 11 C 1.46380 * 120.00226 * 180.02562 * 9 8 5 12 12 H 1.08001 * 119.99821 * 10.06582 * 11 9 8 13 13 C 1.40046 * 120.00183 * 190.07104 * 11 9 8 14 14 N 1.30676 * 119.99992 * 191.89932 * 13 11 9 15 15 Si 1.86800 * 120.00064 * 12.17434 * 13 11 9 16 16 H 1.48497 * 109.46994 * 269.72562 * 15 13 11 17 17 H 1.48502 * 109.46818 * 29.72647 * 15 13 11 18 18 H 1.48498 * 109.47024 * 149.72598 * 15 13 11 19 19 H 1.09001 * 109.46859 * 171.27494 * 1 2 3 20 20 H 1.08999 * 109.46969 * 291.27307 * 1 2 3 21 21 H 1.08998 * 109.46799 * 51.27441 * 1 2 3 22 22 H 1.09007 * 114.39088 * 27.42221 * 4 2 1 23 23 H 1.09001 * 114.08765 * 254.53129 * 4 2 1 24 24 H 1.09003 * 109.46991 * 177.94106 * 6 5 4 25 25 H 1.08998 * 109.47306 * 297.94004 * 6 5 4 26 26 H 1.09003 * 109.47380 * 57.94677 * 6 5 4 27 27 H 1.08994 * 109.47410 * 302.05799 * 7 5 4 28 28 H 1.09000 * 109.47264 * 62.05961 * 7 5 4 29 29 H 1.09003 * 109.46787 * 182.05415 * 7 5 4 30 30 H 0.97000 * 119.99749 * 355.20540 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9520 1.0049 0.0000 4 6 2.1445 -0.9221 1.0660 5 6 3.1582 -1.2301 -0.0447 6 6 3.5753 -2.7012 -0.0980 7 6 4.3530 -0.2746 -0.0611 8 7 2.1158 -0.8811 -1.0215 9 6 1.8274 -1.2165 -2.2946 10 8 2.5400 -2.0002 -2.8938 11 6 0.6576 -0.6374 -2.9571 12 1 0.1205 0.1755 -2.4912 13 6 0.2349 -1.1375 -4.1951 14 7 -0.6534 -0.4830 -4.8953 15 14 0.9351 -2.7439 -4.8419 16 1 2.1459 -2.4644 -5.6548 17 1 1.2973 -3.6214 -3.6999 18 1 -0.0813 -3.4230 -5.6850 19 1 -0.3633 -1.0158 -0.1559 20 1 -0.3633 0.3729 0.9576 21 1 -0.3633 0.6429 -0.8017 22 1 1.5166 -1.7683 1.3453 23 1 2.5656 -0.3942 1.9216 24 1 4.2645 -2.8536 -0.9287 25 1 4.0663 -2.9738 0.8361 26 1 2.6923 -3.3244 -0.2397 27 1 3.9980 0.7493 -0.1777 28 1 4.9027 -0.3641 0.8759 29 1 5.0098 -0.5284 -0.8932 30 1 -1.0712 0.3115 -4.5277 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307544518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -46.572401 kcal Electronic energy + Delta-G solvation = -13183.820441 eV Core-core repulsion = 10978.618420 eV Total energy + Delta-G solvation = -2205.202021 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.49115 -38.45983 -35.09036 -33.29133 -30.90770 -28.78086 -28.37424 -27.33718 -23.00932 -21.83876 -20.29108 -18.60539 -17.26747 -16.81224 -15.90695 -15.84958 -15.08334 -14.90459 -14.49278 -14.36705 -14.12543 -13.38720 -13.17688 -12.85142 -12.77517 -12.60920 -12.39640 -12.29319 -12.00565 -11.97416 -11.25215 -11.10717 -11.01461 -10.05286 -9.34177 -9.11115 -7.06036 1.40833 1.47562 1.90634 2.17684 2.30718 2.54561 3.31179 3.46254 4.05408 4.09735 4.15640 4.31817 4.34267 4.51412 4.72934 4.76931 4.87477 4.89572 4.94742 5.04975 5.11506 5.13376 5.31203 5.41862 5.56815 5.61046 5.75673 6.20116 6.67683 7.41819 8.06778 8.12401 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.014420 C = 0.011895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.299485 B = 1941.271291 C = 2353.340496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.123 3.877 3 H 0.089 0.911 4 C -0.116 4.116 5 C 0.130 3.870 6 C -0.133 4.133 7 C -0.139 4.139 8 N -0.663 5.663 9 C 0.574 3.426 10 O -0.645 6.645 11 C -0.609 4.609 12 H 0.072 0.928 13 C 0.029 3.971 14 N -0.852 5.852 15 Si 1.151 2.849 16 H -0.295 1.295 17 H -0.292 1.292 18 H -0.301 1.301 19 H 0.038 0.962 20 H 0.095 0.905 21 H 0.036 0.964 22 H 0.091 0.909 23 H 0.122 0.878 24 H 0.034 0.966 25 H 0.097 0.903 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.036 0.964 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 0.934 14.236 15.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.107 0.893 4 C -0.154 4.154 5 C 0.046 3.954 6 C -0.191 4.191 7 C -0.197 4.197 8 N -0.398 5.398 9 C 0.383 3.617 10 O -0.539 6.539 11 C -0.646 4.646 12 H 0.090 0.910 13 C -0.185 4.185 14 N -0.481 5.481 15 Si 0.982 3.018 16 H -0.222 1.222 17 H -0.220 1.220 18 H -0.231 1.231 19 H 0.057 0.943 20 H 0.114 0.886 21 H 0.055 0.945 22 H 0.109 0.891 23 H 0.141 0.859 24 H 0.053 0.947 25 H 0.116 0.884 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.055 0.945 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.170 -0.430 12.463 13.500 hybrid contribution -0.260 1.405 0.657 1.573 sum 4.910 0.975 13.120 14.042 Atomic orbital electron populations 1.21890 0.94871 1.01171 1.02014 1.22670 0.94718 0.95078 0.85568 0.89346 1.23569 0.96583 0.99551 0.95658 1.22147 0.90800 0.95559 0.86943 1.21772 1.00492 0.94741 1.02062 1.21904 0.96397 0.98369 1.03005 1.49909 1.30614 1.48054 1.11263 1.17958 0.85457 0.79788 0.78492 1.90184 1.55624 1.43472 1.64660 1.22290 1.14362 1.20878 1.07038 0.91004 1.27698 0.93546 1.04297 0.92919 1.70648 1.23738 1.17022 1.36699 0.82205 0.72979 0.72267 0.74392 1.22188 1.22007 1.23098 0.94292 0.88638 0.94524 0.89083 0.85948 0.94724 0.88432 0.94861 0.92291 0.87771 0.94455 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.72 71.98 0.63 -4.09 16 2 C 0.12 4.07 4.23 41.88 0.18 4.25 16 3 H 0.09 2.66 7.28 -2.39 -0.02 2.64 16 4 C -0.12 -2.93 7.17 31.02 0.22 -2.70 16 5 C 0.13 4.31 1.59 0.40 0.00 4.31 16 6 C -0.13 -4.47 8.73 71.98 0.63 -3.84 16 7 C -0.14 -3.84 9.26 71.98 0.67 -3.17 16 8 N -0.66 -29.31 3.25 -790.13 -2.57 -31.87 16 9 C 0.57 32.30 7.58 86.36 0.65 32.95 16 10 O -0.64 -39.35 12.46 -4.31 -0.05 -39.40 16 11 C -0.61 -35.83 9.19 24.83 0.23 -35.61 16 12 H 0.07 4.17 5.73 -2.91 -0.02 4.16 16 13 C 0.03 1.75 5.52 85.30 0.47 2.22 16 14 N -0.85 -50.79 13.65 21.84 0.30 -50.49 16 15 Si 1.15 62.51 26.40 68.60 1.81 64.32 16 16 H -0.29 -16.12 7.11 99.48 0.71 -15.41 16 17 H -0.29 -16.53 6.44 99.48 0.64 -15.89 16 18 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 19 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 20 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 21 H 0.04 1.39 6.40 -2.39 -0.02 1.37 16 22 H 0.09 2.30 8.11 -2.38 -0.02 2.28 16 23 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.61 7.02 -2.39 -0.02 1.59 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.28 15.91 8.72 -92.71 -0.81 15.10 16 Total: -1.00 -72.18 246.76 4.17 -68.00 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: 1.01 Total: -4.88 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.68 Total: -5.68 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -2.27 Total: -82.36 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.05 Total: -39.40 kcal Atomic # 14 Polarization: 62.51 SS G_CDS: 1.81 Total: 64.32 kcal Total: -72.18 4.17 -68.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307544518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.431 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds