Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48494 * 109.47441 * 239.99684 * 3 2 1 5 5 H 1.48506 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47220 * 119.99866 * 3 2 1 7 7 C 1.37873 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47125 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.37484 * 119.99941 * 179.97438 * 11 10 9 13 13 N 1.29262 * 118.84915 * 0.02562 * 12 11 10 14 14 C 1.45843 * 123.74494 * 180.98689 * 13 12 11 15 15 C 1.53025 * 110.59133 * 339.18423 * 14 13 12 16 16 C 1.53617 * 108.43959 * 49.42666 * 15 14 13 17 17 N 1.37482 * 118.84951 * 180.02562 * 12 11 10 18 18 H 0.97003 * 120.00483 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46782 * 60.00315 * 9 7 2 20 20 H 1.08997 * 109.47153 * 300.00039 * 9 7 2 21 21 H 1.08998 * 109.46592 * 60.00115 * 10 9 7 22 22 H 1.08997 * 109.47363 * 300.00187 * 10 9 7 23 23 H 0.97000 * 120.00016 * 0.02562 * 11 10 9 24 24 H 1.09001 * 109.23290 * 218.90663 * 14 13 12 25 25 H 1.09001 * 109.26479 * 99.48361 * 14 13 12 26 26 H 1.09002 * 109.64035 * 289.74539 * 15 14 13 27 27 H 1.08997 * 109.64377 * 169.11357 * 15 14 13 28 28 H 1.09002 * 109.87243 * 60.06595 * 16 15 14 29 29 H 1.08996 * 109.86897 * 181.04969 * 16 15 14 30 30 H 0.97003 * 120.64331 * 347.12160 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.2002 -6.1214 0.0007 13 7 3.4925 -6.0955 0.0003 14 6 4.3268 -7.2915 -0.0211 15 6 3.5368 -8.5076 0.4675 16 6 2.1995 -8.5534 -0.2871 17 7 1.4890 -7.2980 0.0008 18 1 -0.4851 0.8400 -0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6043 0.8905 22 1 2.8719 -3.6043 -0.8894 23 1 0.5427 -4.9308 0.0011 24 1 5.1896 -7.1391 0.6275 25 1 4.6709 -7.4718 -1.0395 26 1 3.3507 -8.4177 1.5377 27 1 4.1026 -9.4172 0.2659 28 1 2.3814 -8.6387 -1.3584 29 1 1.6089 -9.4023 0.0571 30 1 0.5370 -7.3003 0.1871 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307574063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = 17.850978 kcal Electronic energy + Delta-G solvation = -12175.207276 eV Core-core repulsion = 10005.091614 eV Total energy + Delta-G solvation = -2170.115663 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01419 -35.53452 -33.07071 -32.41017 -30.90327 -28.53344 -25.10085 -24.45856 -22.23198 -20.73627 -18.49177 -17.71850 -16.19214 -15.69439 -15.02898 -14.44213 -14.03956 -13.70759 -13.41465 -13.27090 -12.96610 -12.20116 -12.02157 -11.17942 -11.06540 -11.04276 -10.72846 -10.55478 -9.95351 -9.45992 -9.22475 -8.48782 -8.39930 -8.21197 -7.26754 -6.01259 -4.03121 3.22862 3.36743 3.40028 3.43915 3.46238 4.36835 4.51248 4.84801 4.99332 5.16992 5.35752 5.49978 5.58169 5.76840 5.89009 6.21574 6.30818 6.51681 6.63098 6.76481 6.99174 7.40606 7.66531 7.77285 7.78771 8.00830 8.39071 8.48061 9.02764 9.26187 9.61009 11.10615 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.082962 B = 0.006332 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.424292 B = 4421.138406 C = 4707.757927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.010 3.990 10 C 0.154 3.846 11 N -0.726 5.726 12 C 0.630 3.370 13 N -0.678 5.678 14 C 0.093 3.907 15 C -0.171 4.171 16 C 0.133 3.867 17 N -0.781 5.781 18 H 0.261 0.739 19 H 0.019 0.981 20 H 0.019 0.981 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.396 0.604 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.262 -15.321 0.025 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.027 4.027 10 C 0.031 3.969 11 N -0.366 5.366 12 C 0.267 3.733 13 N -0.422 5.422 14 C -0.039 4.039 15 C -0.211 4.211 16 C 0.008 3.992 17 N -0.427 5.427 18 H 0.071 0.929 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.230 0.770 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.101 -14.635 -0.013 14.960 hybrid contribution -0.792 0.046 0.094 0.799 sum 2.308 -14.588 0.081 14.770 Atomic orbital electron populations 1.69950 1.06097 1.26816 1.50727 1.24992 0.94865 0.99337 0.95161 0.86585 0.79501 0.82749 0.78750 1.20139 1.21344 1.20148 1.21039 0.93246 0.90420 1.50877 0.92270 1.19344 0.94450 0.91415 0.97507 1.21434 0.95060 0.79956 1.00487 1.44537 1.07992 1.03048 1.81034 1.18628 0.86767 0.80076 0.87858 1.71060 1.01544 1.28128 1.41442 1.21372 0.96008 0.87044 0.99428 1.22478 0.97288 1.00564 1.00756 1.21425 0.93305 0.85627 0.98864 1.45196 1.11286 1.05157 1.81108 0.92920 0.96240 0.96247 0.93094 0.93048 0.76981 0.91345 0.93299 0.91494 0.91023 0.92657 0.90584 0.77381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.28 55.43 0.74 -26.01 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.12 16 10 C 0.15 3.41 5.54 -4.04 -0.02 3.39 16 11 N -0.73 -13.43 5.67 -62.05 -0.35 -13.78 16 12 C 0.63 11.01 8.35 -321.40 -2.68 8.33 16 13 N -0.68 -12.84 9.76 -62.46 -0.61 -13.45 16 14 C 0.09 1.39 7.19 -4.38 -0.03 1.35 16 15 C -0.17 -1.97 6.25 -26.40 -0.16 -2.14 16 16 C 0.13 1.44 7.21 -3.40 -0.02 1.41 16 17 N -0.78 -10.27 5.79 -61.31 -0.35 -10.62 16 18 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 19 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 22 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.40 6.52 8.56 -40.82 -0.35 6.17 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.39 4.26 8.93 -40.82 -0.36 3.89 16 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -31.52 254.51 -9.73 -41.25 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.48 Total: 3.02 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.48 Total: -0.99 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.58 Total: -63.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.52 -9.73 -41.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.097 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds