Wall clock time and date at job start Mon Mar 30 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86798 * 120.00128 * 2 1 4 4 H 1.48494 * 109.47441 * 239.99684 * 3 2 1 5 5 H 1.48506 * 109.47020 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47220 * 119.99866 * 3 2 1 7 7 C 1.37873 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00574 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47125 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.37484 * 119.99941 * 179.97438 * 11 10 9 13 13 N 1.29262 * 118.84915 * 0.02562 * 12 11 10 14 14 C 1.45843 * 123.74494 * 180.98689 * 13 12 11 15 15 C 1.53025 * 110.59133 * 339.18423 * 14 13 12 16 16 C 1.53617 * 108.43959 * 49.42666 * 15 14 13 17 17 N 1.37482 * 118.84951 * 180.02562 * 12 11 10 18 18 H 0.97003 * 120.00483 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46782 * 60.00315 * 9 7 2 20 20 H 1.08997 * 109.47153 * 300.00039 * 9 7 2 21 21 H 1.08998 * 109.46592 * 60.00115 * 10 9 7 22 22 H 1.08997 * 109.47363 * 300.00187 * 10 9 7 23 23 H 0.97000 * 120.00016 * 0.02562 * 11 10 9 24 24 H 1.09001 * 109.23290 * 218.90663 * 14 13 12 25 25 H 1.09001 * 109.26479 * 99.48361 * 14 13 12 26 26 H 1.09002 * 109.64035 * 289.74539 * 15 14 13 27 27 H 1.08997 * 109.64377 * 169.11357 * 15 14 13 28 28 H 1.09002 * 109.87243 * 60.06595 * 16 15 14 29 29 H 1.08996 * 109.86897 * 181.04969 * 16 15 14 30 30 H 0.97003 * 120.64331 * 347.12160 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.2002 -6.1214 0.0007 13 7 3.4925 -6.0955 0.0003 14 6 4.3268 -7.2915 -0.0211 15 6 3.5368 -8.5076 0.4675 16 6 2.1995 -8.5534 -0.2871 17 7 1.4890 -7.2980 0.0008 18 1 -0.4851 0.8400 -0.0004 19 1 0.6247 -2.5570 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6043 0.8905 22 1 2.8719 -3.6043 -0.8894 23 1 0.5427 -4.9308 0.0011 24 1 5.1896 -7.1391 0.6275 25 1 4.6709 -7.4718 -1.0395 26 1 3.3507 -8.4177 1.5377 27 1 4.1026 -9.4172 0.2659 28 1 2.3814 -8.6387 -1.3584 29 1 1.6089 -9.4023 0.0571 30 1 0.5370 -7.3003 0.1871 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307574063.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:10 Heat of formation + Delta-G solvation = -3.582181 kcal Electronic energy + Delta-G solvation = -12176.136688 eV Core-core repulsion = 10005.091614 eV Total energy + Delta-G solvation = -2171.045074 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.22445 -37.07744 -35.03997 -33.59828 -32.48720 -30.20156 -26.58456 -26.03684 -23.51880 -22.56396 -19.72181 -19.03697 -18.26677 -16.95036 -16.42989 -16.22076 -15.67406 -15.03625 -14.83902 -14.36728 -14.20621 -14.15264 -13.27526 -13.13023 -12.83104 -12.46749 -12.30178 -12.07992 -11.54515 -11.48191 -11.37394 -10.55107 -9.73276 -9.52269 -8.66520 -8.20620 -6.30758 1.43341 1.46447 1.54239 1.98982 2.14449 2.44720 3.13945 3.18982 3.93861 4.06933 4.21669 4.55381 4.64002 4.68687 4.69825 4.73960 4.87113 5.00525 5.08952 5.28424 5.46958 5.66809 5.68310 5.80862 6.16928 6.26042 6.42717 6.83390 7.22653 7.38583 7.95882 8.91444 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.082962 B = 0.006332 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 337.424292 B = 4421.138406 C = 4707.757927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.021 3.979 10 C 0.181 3.819 11 N -0.728 5.728 12 C 0.625 3.375 13 N -0.724 5.724 14 C 0.084 3.916 15 C -0.163 4.163 16 C 0.129 3.871 17 N -0.771 5.771 18 H 0.265 0.735 19 H 0.003 0.997 20 H 0.003 0.997 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.405 0.595 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 -16.361 0.013 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.056 3.944 11 N -0.370 5.370 12 C 0.261 3.739 13 N -0.468 5.468 14 C -0.046 4.046 15 C -0.202 4.202 16 C 0.005 3.995 17 N -0.418 5.418 18 H 0.074 0.926 19 H 0.021 0.979 20 H 0.021 0.979 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.241 0.759 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.403 -15.734 -0.025 16.098 hybrid contribution -0.881 0.295 0.090 0.933 sum 2.523 -15.438 0.065 15.643 Atomic orbital electron populations 1.70062 1.07628 1.27977 1.51258 1.25890 0.95785 1.03146 0.94454 0.85485 0.78280 0.78034 0.79161 1.19289 1.20586 1.19301 1.21456 0.93600 0.91940 1.51260 0.92280 1.19154 0.94440 0.92259 0.95766 1.20804 0.93783 0.80705 0.99060 1.44250 1.08317 1.02575 1.81833 1.18541 0.86951 0.80698 0.87732 1.70947 1.02767 1.31245 1.41870 1.21458 0.95882 0.87545 0.99759 1.22401 0.97613 1.00144 1.00086 1.21706 0.93301 0.85386 0.99119 1.45171 1.11939 1.04529 1.80152 0.92621 0.97886 0.97851 0.94478 0.94445 0.75931 0.91706 0.93030 0.92319 0.87824 0.92403 0.86797 0.75948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.28 21.44 0.28 -55.58 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.18 8.22 5.54 86.38 0.48 8.70 16 11 N -0.73 -27.00 5.67 -350.21 -1.98 -28.99 16 12 C 0.62 21.38 8.35 261.00 2.18 23.56 16 13 N -0.72 -27.21 9.76 -351.52 -3.43 -30.64 16 14 C 0.08 2.42 7.19 86.51 0.62 3.05 16 15 C -0.16 -3.32 6.25 30.81 0.19 -3.13 16 16 C 0.13 2.37 7.21 86.47 0.62 2.99 16 17 N -0.77 -18.66 5.79 -347.87 -2.01 -20.68 16 18 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 19 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 20 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 21 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.41 13.31 8.56 -92.71 -0.79 12.52 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.40 7.84 8.93 -92.71 -0.83 7.02 16 Total: -1.00 -67.72 254.51 -0.66 -68.38 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -0.49 Total: 14.87 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 4.94 Total: 6.09 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -7.14 Total: -135.88 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.72 -0.66 -68.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307574063.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.799 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds