Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 112.84857 * 2 1 4 4 C 1.53782 * 113.61402 * 228.80724 * 2 1 3 5 5 C 1.53776 * 87.08153 * 220.01703 * 4 2 1 6 6 H 1.08998 * 113.61607 * 140.06506 * 5 4 2 7 7 N 1.46503 * 113.61029 * 270.88210 * 5 4 2 8 8 C 1.34775 * 120.00162 * 254.13460 * 7 5 4 9 9 O 1.21691 * 119.99510 * 0.02562 * 8 7 5 10 10 C 1.46373 * 120.00541 * 180.02562 * 8 7 5 11 11 H 1.08004 * 119.99735 * 6.31768 * 10 8 7 12 12 C 1.40041 * 120.00339 * 186.32404 * 10 8 7 13 13 N 1.30673 * 120.00118 * 175.03920 * 12 10 8 14 14 Si 1.86798 * 120.00162 * 355.03155 * 12 10 8 15 15 H 1.48509 * 109.46914 * 60.00376 * 14 12 10 16 16 H 1.48502 * 109.47501 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47504 * 300.00922 * 14 12 10 18 18 C 1.53775 * 87.17287 * 25.47235 * 5 4 2 19 19 H 1.09010 * 113.61529 * 219.97797 * 18 5 4 20 20 C 1.53004 * 113.61464 * 89.07611 * 18 5 4 21 21 H 1.08997 * 109.47457 * 171.69361 * 1 2 3 22 22 H 1.09004 * 109.46703 * 291.69104 * 1 2 3 23 23 H 1.08995 * 109.47268 * 51.68746 * 1 2 3 24 24 H 1.09006 * 113.61439 * 105.46193 * 4 2 1 25 25 H 1.09000 * 113.61140 * 334.56840 * 4 2 1 26 26 H 0.97008 * 120.00211 * 74.14313 * 7 5 4 27 27 H 0.97004 * 120.00195 * 5.08212 * 13 12 10 28 28 H 1.08995 * 109.46758 * 79.50384 * 20 18 5 29 29 H 1.09000 * 109.46840 * 199.50120 * 20 18 5 30 30 H 1.08994 * 109.46761 * 319.50304 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1460 -0.9280 -1.0603 5 6 3.1923 -1.3136 -0.0014 6 1 3.4454 -2.3737 -0.0034 7 7 4.3734 -0.4467 -0.0007 8 6 5.5405 -0.8975 -0.5016 9 8 5.6132 -2.0245 -0.9549 10 6 6.7207 -0.0317 -0.5004 11 1 6.6854 0.9287 -0.0075 12 6 7.8957 -0.4485 -1.1383 13 7 8.9169 0.3624 -1.2215 14 14 8.0031 -2.1638 -1.8702 15 1 6.9542 -2.3253 -2.9090 16 1 9.3413 -2.3571 -2.4844 17 1 7.7989 -3.1725 -0.7997 18 6 2.1473 -0.9317 1.0601 19 1 2.5673 -0.4036 1.9162 20 6 1.2333 -2.0901 1.4648 21 1 -0.3634 -1.0168 -0.1485 22 1 -0.3633 0.3798 0.9550 23 1 -0.3633 0.6371 -0.8063 24 1 2.5649 -0.3969 -1.9151 25 1 1.4944 -1.7521 -1.3507 26 1 4.3154 0.4518 0.3605 27 1 8.8889 1.2248 -0.7783 28 1 1.7550 -2.7343 2.1725 29 1 0.3305 -1.6949 1.9305 30 1 0.9633 -2.6661 0.5798 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307590855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -51.999527 kcal Electronic energy + Delta-G solvation = -12662.939798 eV Core-core repulsion = 10457.502439 eV Total energy + Delta-G solvation = -2205.437359 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73396 -37.17621 -32.92098 -32.41812 -29.54473 -28.66467 -26.03193 -23.59471 -22.23773 -19.85370 -18.16878 -17.70203 -15.87413 -15.38082 -14.75968 -14.01824 -13.83533 -13.40388 -13.06501 -12.69936 -12.25852 -12.13492 -12.07578 -11.98762 -11.70744 -11.06431 -10.56029 -10.32015 -10.19348 -9.79337 -9.65999 -9.22411 -8.92277 -7.94191 -7.87318 -6.97711 -4.91816 3.62047 3.71292 4.09541 4.34291 4.40743 4.62464 4.69326 4.84478 5.13213 5.19809 5.49039 5.52461 5.62475 5.67795 5.83200 5.87433 5.92410 6.03255 6.05128 6.18186 6.35525 6.46502 6.60705 6.65711 7.52021 7.73482 7.80094 8.12706 8.85014 9.09924 10.08203 10.34749 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064812 B = 0.009031 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.914952 B = 3099.649692 C = 3251.971097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.152 4.152 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.737 5.737 8 C 0.553 3.447 9 O -0.617 6.617 10 C -0.599 4.599 11 H 0.069 0.931 12 C 0.059 3.941 13 N -0.834 5.834 14 Si 1.135 2.865 15 H -0.287 1.287 16 H -0.324 1.324 17 H -0.289 1.289 18 C -0.123 4.123 19 H 0.074 0.926 20 C -0.128 4.128 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.387 0.613 27 H 0.277 0.723 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -0.533 3.659 14.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.103 0.897 4 C -0.192 4.192 5 C 0.031 3.969 6 H 0.109 0.891 7 N -0.386 5.386 8 C 0.362 3.638 9 O -0.511 6.511 10 C -0.635 4.635 11 H 0.088 0.912 12 C -0.158 4.158 13 N -0.461 5.461 14 Si 0.969 3.031 15 H -0.215 1.215 16 H -0.257 1.257 17 H -0.216 1.216 18 C -0.142 4.142 19 H 0.092 0.908 20 C -0.185 4.185 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.219 0.781 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.076 -2.201 2.531 13.499 hybrid contribution -1.133 1.864 1.210 2.495 sum -14.209 -0.336 3.741 14.697 Atomic orbital electron populations 1.21714 0.95380 1.01550 1.00967 1.22580 0.94972 0.98293 0.97118 0.89686 1.23505 0.98647 0.99179 0.97834 1.21544 0.85008 0.96407 0.93934 0.89141 1.45445 1.09206 1.16583 1.67365 1.18436 0.82520 0.86540 0.76318 1.90077 1.83591 1.22550 1.54840 1.22048 0.96738 1.05097 1.39601 0.91235 1.27182 0.90491 1.05816 0.92316 1.70667 1.31800 1.09501 1.34143 0.82269 0.71740 0.72013 0.77072 1.21495 1.25653 1.21639 1.22883 0.96923 0.97167 0.97244 0.90773 1.21512 0.98632 0.97162 1.01199 0.92517 0.92997 0.93112 0.91447 0.90231 0.78083 0.91268 0.92558 0.92448 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.62 37.16 0.32 -1.18 16 2 C -0.11 -1.49 4.20 -89.67 -0.38 -1.86 16 3 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.15 -2.42 7.08 -25.92 -0.18 -2.60 16 5 C 0.14 2.55 3.87 -67.12 -0.26 2.29 16 6 H 0.09 1.86 7.46 -51.93 -0.39 1.47 16 7 N -0.74 -16.00 5.26 -54.43 -0.29 -16.29 16 8 C 0.55 15.04 7.61 -12.99 -0.10 14.94 16 9 O -0.62 -18.15 11.73 5.20 0.06 -18.08 16 10 C -0.60 -17.23 9.96 -35.64 -0.36 -17.59 16 11 H 0.07 1.97 8.05 -52.48 -0.42 1.54 16 12 C 0.06 1.74 5.52 -17.37 -0.10 1.65 16 13 N -0.83 -24.46 13.64 55.55 0.76 -23.70 16 14 Si 1.14 30.72 25.82 -169.99 -4.39 26.33 16 15 H -0.29 -7.95 6.99 56.52 0.39 -7.55 16 16 H -0.32 -8.41 7.11 56.52 0.40 -8.01 16 17 H -0.29 -7.92 7.10 56.52 0.40 -7.52 16 18 C -0.12 -1.74 4.22 -89.67 -0.38 -2.12 16 19 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 20 C -0.13 -1.51 8.31 37.16 0.31 -1.20 16 21 H 0.06 0.58 6.98 -51.93 -0.36 0.22 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.08 1.14 7.49 -51.93 -0.39 0.75 16 26 H 0.39 7.56 8.68 -40.82 -0.35 7.21 16 27 H 0.28 7.78 8.72 -40.82 -0.36 7.43 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 7.55 -51.93 -0.39 0.19 16 30 H 0.06 0.67 7.10 -51.93 -0.37 0.30 16 LS Contribution 247.92 15.07 3.74 3.74 Total: -1.00 -31.49 247.92 -5.61 -37.10 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.37 Total: -1.42 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.12 Total: -7.68 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.47 Total: -39.99 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.06 Total: -18.08 kcal Atomic # 14 Polarization: 30.72 SS G_CDS: -4.39 Total: 26.33 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.49 -5.61 -37.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.895 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds