Wall clock time and date at job start Mon Mar 30 2020 02:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 112.84857 * 2 1 4 4 C 1.53782 * 113.61402 * 228.80724 * 2 1 3 5 5 C 1.53776 * 87.08153 * 220.01703 * 4 2 1 6 6 H 1.08998 * 113.61607 * 140.06506 * 5 4 2 7 7 N 1.46503 * 113.61029 * 270.88210 * 5 4 2 8 8 C 1.34775 * 120.00162 * 254.13460 * 7 5 4 9 9 O 1.21691 * 119.99510 * 0.02562 * 8 7 5 10 10 C 1.46373 * 120.00541 * 180.02562 * 8 7 5 11 11 H 1.08004 * 119.99735 * 6.31768 * 10 8 7 12 12 C 1.40041 * 120.00339 * 186.32404 * 10 8 7 13 13 N 1.30673 * 120.00118 * 175.03920 * 12 10 8 14 14 Si 1.86798 * 120.00162 * 355.03155 * 12 10 8 15 15 H 1.48509 * 109.46914 * 60.00376 * 14 12 10 16 16 H 1.48502 * 109.47501 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47504 * 300.00922 * 14 12 10 18 18 C 1.53775 * 87.17287 * 25.47235 * 5 4 2 19 19 H 1.09010 * 113.61529 * 219.97797 * 18 5 4 20 20 C 1.53004 * 113.61464 * 89.07611 * 18 5 4 21 21 H 1.08997 * 109.47457 * 171.69361 * 1 2 3 22 22 H 1.09004 * 109.46703 * 291.69104 * 1 2 3 23 23 H 1.08995 * 109.47268 * 51.68746 * 1 2 3 24 24 H 1.09006 * 113.61439 * 105.46193 * 4 2 1 25 25 H 1.09000 * 113.61140 * 334.56840 * 4 2 1 26 26 H 0.97008 * 120.00211 * 74.14313 * 7 5 4 27 27 H 0.97004 * 120.00195 * 5.08212 * 13 12 10 28 28 H 1.08995 * 109.46758 * 79.50384 * 20 18 5 29 29 H 1.09000 * 109.46840 * 199.50120 * 20 18 5 30 30 H 1.08994 * 109.46761 * 319.50304 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1460 -0.9280 -1.0603 5 6 3.1923 -1.3136 -0.0014 6 1 3.4454 -2.3737 -0.0034 7 7 4.3734 -0.4467 -0.0007 8 6 5.5405 -0.8975 -0.5016 9 8 5.6132 -2.0245 -0.9549 10 6 6.7207 -0.0317 -0.5004 11 1 6.6854 0.9287 -0.0075 12 6 7.8957 -0.4485 -1.1383 13 7 8.9169 0.3624 -1.2215 14 14 8.0031 -2.1638 -1.8702 15 1 6.9542 -2.3253 -2.9090 16 1 9.3413 -2.3571 -2.4844 17 1 7.7989 -3.1725 -0.7997 18 6 2.1473 -0.9317 1.0601 19 1 2.5673 -0.4036 1.9162 20 6 1.2333 -2.0901 1.4648 21 1 -0.3634 -1.0168 -0.1485 22 1 -0.3633 0.3798 0.9550 23 1 -0.3633 0.6371 -0.8063 24 1 2.5649 -0.3969 -1.9151 25 1 1.4944 -1.7521 -1.3507 26 1 4.3154 0.4518 0.3605 27 1 8.8889 1.2248 -0.7783 28 1 1.7550 -2.7343 2.1725 29 1 0.3305 -1.6949 1.9305 30 1 0.9633 -2.6661 0.5798 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307590855.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:20 Heat of formation + Delta-G solvation = -73.842923 kcal Electronic energy + Delta-G solvation = -12663.886998 eV Core-core repulsion = 10457.502439 eV Total energy + Delta-G solvation = -2206.384560 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13857 -39.14645 -35.14120 -34.23379 -30.55187 -29.98397 -28.06517 -24.78271 -23.64043 -21.80015 -20.18401 -19.14688 -17.40675 -17.24800 -16.19139 -15.79911 -15.59611 -14.96711 -14.73821 -14.41326 -14.19694 -13.34136 -13.28095 -13.02829 -12.76633 -12.65362 -12.41675 -12.12822 -11.64151 -11.40967 -11.18195 -10.98685 -10.88926 -10.14641 -9.68593 -9.23672 -7.17901 1.42051 1.52456 1.95401 2.17798 2.37851 2.83106 3.22940 3.55953 3.62462 3.98484 4.02044 4.52526 4.54078 4.61515 4.73864 4.78033 4.92362 5.00906 5.04768 5.11744 5.17501 5.33115 5.43005 5.46173 5.49233 5.60523 5.86237 6.08990 6.60200 7.13476 7.96847 8.08249 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064812 B = 0.009031 C = 0.008608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.914952 B = 3099.649692 C = 3251.971097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.149 4.149 5 C 0.112 3.888 6 H 0.064 0.936 7 N -0.725 5.725 8 C 0.550 3.450 9 O -0.642 6.642 10 C -0.617 4.617 11 H 0.067 0.933 12 C 0.028 3.972 13 N -0.846 5.846 14 Si 1.167 2.833 15 H -0.300 1.300 16 H -0.306 1.306 17 H -0.298 1.298 18 C -0.107 4.107 19 H 0.075 0.925 20 C -0.125 4.125 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.098 0.902 26 H 0.398 0.602 27 H 0.278 0.722 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.133 -0.508 4.245 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.118 4.118 3 H 0.100 0.900 4 C -0.188 4.188 5 C 0.006 3.994 6 H 0.083 0.917 7 N -0.373 5.373 8 C 0.356 3.644 9 O -0.538 6.538 10 C -0.654 4.654 11 H 0.085 0.915 12 C -0.186 4.186 13 N -0.474 5.474 14 Si 0.999 3.001 15 H -0.228 1.228 16 H -0.237 1.237 17 H -0.226 1.226 18 C -0.126 4.126 19 H 0.094 0.906 20 C -0.183 4.183 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.116 0.884 26 H 0.232 0.768 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.134 -2.145 3.134 15.603 hybrid contribution -0.562 1.870 1.057 2.220 sum -15.695 -0.275 4.191 16.248 Atomic orbital electron populations 1.21688 0.92760 1.02487 1.02197 1.22509 0.97048 0.97328 0.94890 0.90034 1.23505 0.98048 1.00313 0.96971 1.21915 0.84857 0.94455 0.98156 0.91734 1.45196 1.08928 1.17424 1.65775 1.18341 0.83786 0.85909 0.76327 1.90055 1.84398 1.23458 1.55844 1.22239 0.97738 1.05416 1.40001 0.91502 1.27817 0.90784 1.07236 0.92791 1.70668 1.32041 1.09820 1.34913 0.81842 0.72043 0.70065 0.76111 1.22814 1.23688 1.22595 1.22845 0.95367 0.98091 0.96328 0.90637 1.21540 0.99004 0.96220 1.01517 0.91609 0.91386 0.92464 0.93633 0.88368 0.76787 0.91155 0.92690 0.89795 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.62 71.98 0.62 -1.74 16 2 C -0.10 -2.38 4.20 -10.18 -0.04 -2.43 16 3 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 4 C -0.15 -4.52 7.08 31.12 0.22 -4.30 16 5 C 0.11 4.04 3.87 45.51 0.18 4.22 16 6 H 0.06 2.66 7.46 -2.39 -0.02 2.64 16 7 N -0.72 -31.26 5.26 -444.33 -2.34 -33.60 16 8 C 0.55 30.06 7.61 86.36 0.66 30.72 16 9 O -0.64 -38.08 11.73 -4.32 -0.05 -38.13 16 10 C -0.62 -35.78 9.96 24.83 0.25 -35.54 16 11 H 0.07 3.81 8.05 -2.91 -0.02 3.79 16 12 C 0.03 1.66 5.52 85.30 0.47 2.13 16 13 N -0.85 -49.61 13.64 21.83 0.30 -49.31 16 14 Si 1.17 62.63 25.82 68.60 1.77 64.40 16 15 H -0.30 -16.57 6.99 99.48 0.69 -15.87 16 16 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 17 H -0.30 -16.27 7.10 99.48 0.71 -15.57 16 18 C -0.11 -2.77 4.22 -10.18 -0.04 -2.81 16 19 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 20 C -0.13 -2.56 8.31 71.98 0.60 -1.96 16 21 H 0.06 1.06 6.98 -2.39 -0.02 1.04 16 22 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.10 2.59 7.49 -2.39 -0.02 2.57 16 26 H 0.40 15.30 8.68 -92.70 -0.81 14.49 16 27 H 0.28 15.69 8.72 -92.71 -0.81 14.88 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.31 7.55 -2.39 -0.02 1.29 16 30 H 0.06 1.21 7.10 -2.39 -0.02 1.20 16 Total: -1.00 -66.78 247.92 2.85 -63.92 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.27 Total: 4.41 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 2.90 Total: -11.70 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.04 Total: -82.91 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.05 Total: -38.13 kcal Atomic # 14 Polarization: 62.63 SS G_CDS: 1.77 Total: 64.40 kcal Total: -66.78 2.85 -63.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590855.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.920 kcal (2) G-P(sol) polarization free energy of solvation -66.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds