Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 112.84651 * 2 1 4 4 C 1.54046 * 113.69516 * 228.73126 * 2 1 3 5 5 C 1.53775 * 86.98448 * 220.00945 * 4 2 1 6 6 H 1.09003 * 113.61293 * 140.02002 * 5 4 2 7 7 N 1.46499 * 113.61931 * 270.83629 * 5 4 2 8 8 C 1.34775 * 120.00209 * 254.13999 * 7 5 4 9 9 O 1.21683 * 120.00061 * 359.97438 * 8 7 5 10 10 C 1.46378 * 120.00125 * 179.97438 * 8 7 5 11 11 H 1.08004 * 119.99792 * 11.99797 * 10 8 7 12 12 C 1.40040 * 120.00299 * 191.99845 * 10 8 7 13 13 N 1.30673 * 120.00060 * 206.05170 * 12 10 8 14 14 Si 1.86803 * 120.00139 * 25.76904 * 12 10 8 15 15 H 1.48503 * 109.46834 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47366 * 120.00274 * 14 12 10 17 17 H 1.48503 * 109.47133 * 240.00788 * 14 12 10 18 18 C 1.53776 * 87.17483 * 25.43145 * 5 4 2 19 19 H 1.08996 * 113.61952 * 89.07237 * 18 5 4 20 20 C 1.53000 * 113.61591 * 219.98109 * 18 5 4 21 21 H 1.09002 * 109.47111 * 288.80312 * 1 2 3 22 22 H 1.09002 * 109.47007 * 48.80088 * 1 2 3 23 23 H 1.08995 * 109.47188 * 168.80078 * 1 2 3 24 24 H 1.09004 * 113.69707 * 105.49130 * 4 2 1 25 25 H 1.09005 * 113.61428 * 334.51853 * 4 2 1 26 26 H 0.97001 * 119.99569 * 74.13504 * 7 5 4 27 27 H 0.97001 * 119.99739 * 4.80060 * 13 12 10 28 28 H 1.08997 * 109.47331 * 40.48811 * 20 18 5 29 29 H 1.09000 * 109.47466 * 160.49057 * 20 18 5 30 30 H 1.09011 * 109.46826 * 280.49289 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1491 -0.9304 -1.0602 5 6 3.1937 -1.3118 0.0019 6 1 3.4478 -2.3718 0.0034 7 7 4.3739 -0.4439 0.0027 8 6 5.5425 -0.8951 -0.4945 9 8 5.6174 -2.0235 -0.9437 10 6 6.7216 -0.0277 -0.4942 11 1 6.7151 0.8922 0.0717 12 6 7.8581 -0.3906 -1.2276 13 7 9.0356 0.0457 -0.8664 14 14 7.6916 -1.5048 -2.7178 15 1 6.2634 -1.8627 -2.9111 16 1 8.1916 -0.7968 -3.9235 17 1 8.4873 -2.7402 -2.5035 18 6 2.1460 -0.9281 1.0602 19 1 1.4951 -1.7531 1.3495 20 6 2.7323 -0.1827 2.2609 21 1 -0.3633 0.3312 0.9728 22 1 -0.3633 0.6769 -0.7733 23 1 -0.3633 -1.0080 -0.1996 24 1 2.5693 -0.4014 -1.9157 25 1 1.4990 -1.7561 -1.3497 26 1 4.3142 0.4555 0.3611 27 1 9.1322 0.5629 -0.0515 28 1 3.4820 0.5292 1.9159 29 1 1.9368 0.3508 2.7811 30 1 3.1958 -0.8974 2.9411 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307590858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -42.555298 kcal Electronic energy + Delta-G solvation = -12720.476980 eV Core-core repulsion = 10515.449153 eV Total energy + Delta-G solvation = -2205.027826 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60592 -36.90349 -32.88576 -32.15953 -29.93535 -28.69609 -25.97640 -22.81182 -22.03060 -20.30992 -18.18449 -17.99686 -15.51936 -14.93460 -14.24412 -14.07936 -13.98979 -13.48446 -13.11128 -12.76899 -12.38821 -12.26963 -12.03399 -11.74265 -11.29828 -10.87819 -10.72407 -10.53011 -10.01554 -9.76684 -9.60871 -9.28370 -8.79340 -7.90067 -7.64999 -6.98651 -4.81642 3.53413 3.59504 4.05790 4.27462 4.48813 4.62183 4.76131 4.88144 5.11865 5.26109 5.52581 5.59068 5.67311 5.72034 5.86357 5.89515 6.01969 6.07969 6.11949 6.33550 6.37496 6.48727 6.66252 6.73967 7.66304 7.80152 7.91438 8.20242 8.88128 9.22553 10.25627 10.31245 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057100 B = 0.009749 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.253825 B = 2871.339160 C = 3118.743822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.154 4.154 5 C 0.139 3.861 6 H 0.088 0.912 7 N -0.738 5.738 8 C 0.552 3.448 9 O -0.619 6.619 10 C -0.616 4.616 11 H 0.069 0.931 12 C 0.076 3.924 13 N -0.825 5.825 14 Si 1.082 2.918 15 H -0.251 1.251 16 H -0.308 1.308 17 H -0.287 1.287 18 C -0.122 4.122 19 H 0.090 0.910 20 C -0.139 4.139 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.385 0.615 27 H 0.280 0.720 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 1.047 2.666 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.104 0.896 4 C -0.193 4.193 5 C 0.031 3.969 6 H 0.106 0.894 7 N -0.390 5.390 8 C 0.360 3.640 9 O -0.510 6.510 10 C -0.651 4.651 11 H 0.087 0.913 12 C -0.144 4.144 13 N -0.452 5.452 14 Si 0.909 3.091 15 H -0.175 1.175 16 H -0.237 1.237 17 H -0.213 1.213 18 C -0.141 4.141 19 H 0.108 0.892 20 C -0.197 4.197 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.219 0.781 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.525 -0.371 1.206 12.588 hybrid contribution -0.862 1.394 1.670 2.340 sum -13.387 1.023 2.876 13.731 Atomic orbital electron populations 1.21703 0.95432 1.01407 1.01034 1.22628 0.94772 0.98533 0.96987 0.89627 1.23544 0.98723 0.99147 0.97879 1.21446 0.85374 0.96358 0.93680 0.89379 1.45664 1.09114 1.16292 1.67884 1.18313 0.81885 0.87203 0.76618 1.90431 1.85278 1.22046 1.53262 1.21874 0.98461 1.09408 1.35406 0.91289 1.26890 0.90453 0.95562 1.01515 1.70601 1.24322 1.27088 1.23157 0.83355 0.78188 0.74812 0.72753 1.17497 1.23744 1.21297 1.23003 0.97996 0.98648 0.94473 0.89193 1.21628 1.00264 1.00340 0.97420 0.93000 0.93035 0.92826 0.91319 0.90333 0.78137 0.90899 0.92237 0.93185 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.71 37.16 0.36 -1.16 16 2 C -0.11 -1.50 3.81 -89.66 -0.34 -1.84 16 3 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 4 C -0.15 -2.46 7.45 -25.78 -0.19 -2.65 16 5 C 0.14 2.59 4.16 -67.12 -0.28 2.31 16 6 H 0.09 1.83 7.50 -51.93 -0.39 1.44 16 7 N -0.74 -16.07 4.75 -54.43 -0.26 -16.33 16 8 C 0.55 15.03 7.32 -12.99 -0.10 14.94 16 9 O -0.62 -18.33 12.39 5.20 0.06 -18.27 16 10 C -0.62 -17.66 9.81 -35.63 -0.35 -18.01 16 11 H 0.07 1.96 8.06 -52.48 -0.42 1.53 16 12 C 0.08 2.20 5.48 -17.37 -0.10 2.10 16 13 N -0.83 -24.06 13.65 55.55 0.76 -23.30 16 14 Si 1.08 28.20 27.33 -169.99 -4.65 23.56 16 15 H -0.25 -6.78 5.80 56.52 0.33 -6.46 16 16 H -0.31 -7.57 7.11 56.52 0.40 -7.17 16 17 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 18 C -0.12 -1.75 3.89 -89.81 -0.35 -2.10 16 19 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 20 C -0.14 -1.92 9.47 37.16 0.35 -1.57 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.56 7.95 -51.93 -0.41 0.15 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 26 H 0.38 7.61 6.81 -40.82 -0.28 7.33 16 27 H 0.28 7.88 8.72 -40.82 -0.36 7.53 16 28 H 0.06 0.88 5.96 -51.93 -0.31 0.57 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 LS Contribution 249.12 15.07 3.75 3.75 Total: -1.00 -31.19 249.12 -5.72 -36.92 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.41 Total: 1.64 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.99 Total: -7.97 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.50 Total: -39.63 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.06 Total: -18.27 kcal Atomic # 14 Polarization: 28.20 SS G_CDS: -4.65 Total: 23.56 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.19 -5.72 -36.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.640 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds