Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 112.84651 * 2 1 4 4 C 1.54046 * 113.69516 * 228.73126 * 2 1 3 5 5 C 1.53775 * 86.98448 * 220.00945 * 4 2 1 6 6 H 1.09003 * 113.61293 * 140.02002 * 5 4 2 7 7 N 1.46499 * 113.61931 * 270.83629 * 5 4 2 8 8 C 1.34775 * 120.00209 * 254.13999 * 7 5 4 9 9 O 1.21683 * 120.00061 * 359.97438 * 8 7 5 10 10 C 1.46378 * 120.00125 * 179.97438 * 8 7 5 11 11 H 1.08004 * 119.99792 * 11.99797 * 10 8 7 12 12 C 1.40040 * 120.00299 * 191.99845 * 10 8 7 13 13 N 1.30673 * 120.00060 * 206.05170 * 12 10 8 14 14 Si 1.86803 * 120.00139 * 25.76904 * 12 10 8 15 15 H 1.48503 * 109.46834 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47366 * 120.00274 * 14 12 10 17 17 H 1.48503 * 109.47133 * 240.00788 * 14 12 10 18 18 C 1.53776 * 87.17483 * 25.43145 * 5 4 2 19 19 H 1.08996 * 113.61952 * 89.07237 * 18 5 4 20 20 C 1.53000 * 113.61591 * 219.98109 * 18 5 4 21 21 H 1.09002 * 109.47111 * 288.80312 * 1 2 3 22 22 H 1.09002 * 109.47007 * 48.80088 * 1 2 3 23 23 H 1.08995 * 109.47188 * 168.80078 * 1 2 3 24 24 H 1.09004 * 113.69707 * 105.49130 * 4 2 1 25 25 H 1.09005 * 113.61428 * 334.51853 * 4 2 1 26 26 H 0.97001 * 119.99569 * 74.13504 * 7 5 4 27 27 H 0.97001 * 119.99739 * 4.80060 * 13 12 10 28 28 H 1.08997 * 109.47331 * 40.48811 * 20 18 5 29 29 H 1.09000 * 109.47466 * 160.49057 * 20 18 5 30 30 H 1.09011 * 109.46826 * 280.49289 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1491 -0.9304 -1.0602 5 6 3.1937 -1.3118 0.0019 6 1 3.4478 -2.3718 0.0034 7 7 4.3739 -0.4439 0.0027 8 6 5.5425 -0.8951 -0.4945 9 8 5.6174 -2.0235 -0.9437 10 6 6.7216 -0.0277 -0.4942 11 1 6.7151 0.8922 0.0717 12 6 7.8581 -0.3906 -1.2276 13 7 9.0356 0.0457 -0.8664 14 14 7.6916 -1.5048 -2.7178 15 1 6.2634 -1.8627 -2.9111 16 1 8.1916 -0.7968 -3.9235 17 1 8.4873 -2.7402 -2.5035 18 6 2.1460 -0.9281 1.0602 19 1 1.4951 -1.7531 1.3495 20 6 2.7323 -0.1827 2.2609 21 1 -0.3633 0.3312 0.9728 22 1 -0.3633 0.6769 -0.7733 23 1 -0.3633 -1.0080 -0.1996 24 1 2.5693 -0.4014 -1.9157 25 1 1.4990 -1.7561 -1.3497 26 1 4.3142 0.4555 0.3611 27 1 9.1322 0.5629 -0.0515 28 1 3.4820 0.5292 1.9159 29 1 1.9368 0.3508 2.7811 30 1 3.1958 -0.8974 2.9411 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307590858.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -63.533174 kcal Electronic energy + Delta-G solvation = -12721.386649 eV Core-core repulsion = 10515.449153 eV Total energy + Delta-G solvation = -2205.937495 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.04466 -38.87756 -35.09639 -33.94080 -31.08211 -29.99426 -28.02435 -24.12094 -23.27111 -22.17055 -20.12843 -19.65436 -17.46401 -16.57968 -16.01337 -15.51946 -15.49809 -14.92610 -14.70430 -14.53532 -14.13279 -13.88383 -13.31638 -12.90001 -12.79410 -12.43347 -12.31961 -11.99698 -11.73358 -11.38664 -11.02571 -10.96045 -10.84501 -10.07360 -9.52826 -9.22737 -7.07028 1.43259 1.48574 1.96350 2.12488 2.44229 2.90748 3.26258 3.58250 3.67639 3.96549 4.08613 4.51175 4.56062 4.62216 4.73822 4.79203 4.93467 4.98001 5.04476 5.15067 5.22209 5.29589 5.49831 5.50987 5.55929 5.66522 5.94929 6.18466 6.64965 7.25442 8.05813 8.13979 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057100 B = 0.009749 C = 0.008976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.253825 B = 2871.339160 C = 3118.743822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.151 4.151 5 C 0.112 3.888 6 H 0.060 0.940 7 N -0.726 5.726 8 C 0.549 3.451 9 O -0.647 6.647 10 C -0.636 4.636 11 H 0.063 0.937 12 C 0.041 3.959 13 N -0.838 5.838 14 Si 1.117 2.883 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.105 4.105 19 H 0.112 0.888 20 C -0.139 4.139 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.395 0.605 27 H 0.279 0.721 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 1.265 2.917 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.190 4.190 5 C 0.005 3.995 6 H 0.079 0.921 7 N -0.377 5.377 8 C 0.355 3.645 9 O -0.540 6.540 10 C -0.672 4.672 11 H 0.081 0.919 12 C -0.176 4.176 13 N -0.465 5.465 14 Si 0.941 3.059 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.124 4.124 19 H 0.130 0.870 20 C -0.197 4.197 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.231 0.769 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.565 -0.114 1.476 14.640 hybrid contribution -0.285 1.327 1.651 2.137 sum -14.850 1.213 3.127 15.224 Atomic orbital electron populations 1.21669 0.92798 1.02292 1.02303 1.22536 0.96813 0.97513 0.94704 0.90007 1.23551 0.98094 1.00330 0.97048 1.21796 0.85328 0.94337 0.97993 0.92140 1.45371 1.08826 1.17081 1.66393 1.18215 0.83145 0.86529 0.76633 1.90407 1.86088 1.23031 1.54460 1.22049 0.99618 1.09602 1.35901 0.91916 1.27748 0.90507 0.96241 1.03064 1.70625 1.24523 1.27885 1.23469 0.82884 0.77013 0.74087 0.71955 1.19504 1.21026 1.21054 1.22970 0.96127 0.99442 0.93823 0.86975 1.21634 1.00794 1.00032 0.97204 0.91412 0.92293 0.92020 0.93404 0.88409 0.76930 0.91060 0.93747 0.90301 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.71 71.98 0.70 -1.68 16 2 C -0.10 -2.35 3.81 -10.18 -0.04 -2.39 16 3 H 0.08 2.06 8.10 -2.39 -0.02 2.04 16 4 C -0.15 -4.61 7.45 31.21 0.23 -4.38 16 5 C 0.11 4.09 4.16 45.51 0.19 4.28 16 6 H 0.06 2.53 7.50 -2.39 -0.02 2.52 16 7 N -0.73 -31.61 4.75 -444.34 -2.11 -33.72 16 8 C 0.55 30.23 7.32 86.36 0.63 30.86 16 9 O -0.65 -38.80 12.39 -4.30 -0.05 -38.85 16 10 C -0.64 -36.92 9.81 24.83 0.24 -36.68 16 11 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 12 C 0.04 2.39 5.48 85.30 0.47 2.86 16 13 N -0.84 -49.00 13.65 21.83 0.30 -48.70 16 14 Si 1.12 57.32 27.33 68.60 1.88 59.20 16 15 H -0.27 -14.61 5.80 99.48 0.58 -14.03 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 18 C -0.10 -2.72 3.89 -10.27 -0.04 -2.76 16 19 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 20 C -0.14 -3.50 9.47 71.98 0.68 -2.81 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.02 7.95 -2.39 -0.02 1.00 16 24 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.10 2.59 7.97 -2.38 -0.02 2.57 16 26 H 0.40 15.52 6.81 -92.71 -0.63 14.89 16 27 H 0.28 15.85 8.72 -92.71 -0.81 15.04 16 28 H 0.04 1.24 5.96 -2.39 -0.01 1.23 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -66.62 249.12 3.40 -63.22 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.32 Total: 11.55 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 3.07 Total: -12.70 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.81 Total: -82.42 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.05 Total: -38.85 kcal Atomic # 14 Polarization: 57.32 SS G_CDS: 1.88 Total: 59.20 kcal Total: -66.62 3.40 -63.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590858.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.316 kcal (2) G-P(sol) polarization free energy of solvation -66.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds