Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 112.85187 * 2 1 4 4 C 1.53779 * 113.61005 * 228.80801 * 2 1 3 5 5 C 1.53787 * 87.07963 * 219.93029 * 4 2 1 6 6 H 1.08994 * 113.61447 * 270.88515 * 5 4 2 7 7 N 1.46496 * 113.61210 * 139.97940 * 5 4 2 8 8 C 1.34777 * 120.00006 * 104.51086 * 7 5 4 9 9 O 1.21693 * 119.99864 * 359.97438 * 8 7 5 10 10 C 1.46378 * 120.00241 * 180.02562 * 8 7 5 11 11 H 1.07997 * 119.99873 * 359.97438 * 10 8 7 12 12 C 1.40045 * 119.99910 * 179.97438 * 10 8 7 13 13 N 1.30667 * 120.00438 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99804 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47320 * 60.00001 * 14 12 10 16 16 H 1.48500 * 109.47195 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47251 * 300.00125 * 14 12 10 18 18 C 1.53779 * 113.69268 * 131.27039 * 2 1 3 19 19 H 1.09004 * 113.61501 * 254.53633 * 18 2 1 20 20 C 1.52998 * 113.61251 * 25.44348 * 18 2 1 21 21 H 1.09000 * 109.47285 * 171.69336 * 1 2 3 22 22 H 1.09000 * 109.46654 * 291.68876 * 1 2 3 23 23 H 1.09001 * 109.47135 * 51.68403 * 1 2 3 24 24 H 1.08997 * 113.61646 * 105.38661 * 4 2 1 25 25 H 1.08998 * 113.69354 * 334.48969 * 4 2 1 26 26 H 0.97005 * 120.00378 * 284.50666 * 7 5 4 27 27 H 0.96998 * 120.00414 * 180.02562 * 13 12 10 28 28 H 1.09000 * 109.47004 * 177.00548 * 20 18 2 29 29 H 1.09004 * 109.47300 * 296.99529 * 20 18 2 30 30 H 1.08995 * 109.47631 * 57.00095 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0045 0.0000 4 6 2.1459 -0.9280 -1.0603 5 6 3.1937 -1.3119 -0.0021 6 1 4.0717 -0.6661 -0.0027 7 7 3.5338 -2.7368 -0.0030 8 6 4.7036 -3.1501 -0.5295 9 8 5.4771 -2.3396 -1.0046 10 6 5.0432 -4.5739 -0.5310 11 1 4.3566 -5.2933 -0.1098 12 6 6.2586 -5.0033 -1.0786 13 7 7.0892 -4.1331 -1.5887 14 14 6.6923 -6.8203 -1.0798 15 1 5.6673 -7.5734 -1.8464 16 1 8.0227 -7.0112 -1.7111 17 1 6.7317 -7.3207 0.3179 18 6 2.1480 -0.9288 1.0584 19 1 2.5673 -0.3985 1.9134 20 6 1.2350 -2.0872 1.4652 21 1 -0.3634 -1.0169 -0.1485 22 1 -0.3633 0.3798 0.9549 23 1 -0.3633 0.6372 -0.8063 24 1 2.5636 -0.3970 -1.9157 25 1 1.4960 -1.7534 -1.3507 26 1 2.9171 -3.3830 0.3753 27 1 7.9308 -4.4306 -1.9683 28 1 1.7571 -2.7295 2.1745 29 1 0.3317 -1.6920 1.9299 30 1 0.9658 -2.6654 0.5814 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307590859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = -35.917815 kcal Electronic energy + Delta-G solvation = -12645.734528 eV Core-core repulsion = 10440.994525 eV Total energy + Delta-G solvation = -2204.740004 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.51698 -36.52199 -32.64252 -31.81484 -29.18515 -28.76344 -26.11864 -23.42810 -22.07066 -19.43651 -18.02426 -17.02156 -15.74269 -15.22466 -14.71499 -14.16799 -13.66886 -12.99687 -12.48763 -12.41293 -12.02359 -11.97232 -11.82454 -11.58171 -11.15516 -11.05771 -10.65664 -10.45032 -10.34923 -10.15676 -9.74658 -9.60484 -8.81107 -7.55128 -7.38848 -6.14299 -4.60259 3.17794 3.22445 3.24476 4.13906 4.60435 4.81931 4.88721 4.95865 5.29148 5.37775 5.64173 5.69605 5.73899 5.91085 5.97662 6.01294 6.09926 6.14870 6.18593 6.34897 6.43966 6.56502 6.77209 6.94288 7.46561 7.99514 8.19436 8.39468 9.06158 9.61481 10.64976 10.84388 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.070770 B = 0.008321 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.554286 B = 3364.202024 C = 3575.199104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 H 0.085 0.915 4 C -0.150 4.150 5 C 0.144 3.856 6 H 0.098 0.902 7 N -0.755 5.755 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.769 5.769 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.121 4.121 19 H 0.070 0.930 20 C -0.132 4.132 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.381 0.619 27 H 0.268 0.732 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 3.232 4.064 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 H 0.103 0.897 4 C -0.189 4.189 5 C 0.037 3.963 6 H 0.116 0.884 7 N -0.408 5.408 8 C 0.358 3.642 9 O -0.465 6.465 10 C -0.585 4.585 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.398 5.398 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.141 4.141 19 H 0.089 0.911 20 C -0.189 4.189 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.213 0.787 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.856 3.852 3.616 11.183 hybrid contribution -0.081 -1.160 0.149 1.172 sum -9.938 2.692 3.765 10.963 Atomic orbital electron populations 1.21681 0.95280 1.01609 1.00818 1.22389 0.95058 0.98094 0.97666 0.89697 1.23553 0.99043 0.98689 0.97652 1.21925 0.94924 0.86203 0.93269 0.88361 1.46101 1.22756 1.05038 1.66946 1.18232 0.78909 0.89780 0.77268 1.90586 1.50061 1.55972 1.49916 1.20875 1.04261 0.91311 1.42025 0.91588 1.25698 0.95616 0.98720 0.93131 1.70010 1.07405 1.34580 1.27785 0.86455 0.78008 0.83313 0.79063 1.19321 1.20571 1.19315 1.22838 0.97180 0.96775 0.97277 0.91119 1.21513 0.98575 0.97580 1.01274 0.92498 0.93061 0.93175 0.92056 0.90420 0.78677 0.92109 0.92353 0.92738 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.62 37.16 0.32 -1.24 16 2 C -0.11 -1.57 4.30 -89.81 -0.39 -1.95 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.15 -2.57 7.08 -25.92 -0.18 -2.75 16 5 C 0.14 2.85 4.08 -67.12 -0.27 2.58 16 6 H 0.10 2.20 7.54 -51.93 -0.39 1.81 16 7 N -0.75 -17.29 5.25 -54.42 -0.29 -17.58 16 8 C 0.55 16.11 7.75 -12.99 -0.10 16.01 16 9 O -0.58 -19.23 14.66 5.20 0.08 -19.16 16 10 C -0.55 -15.78 9.54 -35.63 -0.34 -16.12 16 11 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 12 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 13 N -0.77 -23.48 11.83 55.55 0.66 -22.82 16 14 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 18 C -0.12 -1.83 4.44 -89.81 -0.40 -2.23 16 19 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.13 -1.76 7.01 37.16 0.26 -1.50 16 21 H 0.06 0.65 6.98 -51.93 -0.36 0.29 16 22 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.31 7.50 -51.93 -0.39 0.92 16 26 H 0.38 7.74 6.80 -40.82 -0.28 7.46 16 27 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 28 H 0.06 0.79 8.04 -51.93 -0.42 0.37 16 29 H 0.05 0.62 7.54 -51.93 -0.39 0.22 16 30 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 LS Contribution 248.80 15.07 3.75 3.75 Total: -1.00 -33.51 248.80 -6.26 -39.77 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.23 Total: 5.45 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.20 Total: -4.81 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.37 Total: -40.40 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.08 Total: -19.16 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.51 -6.26 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.851 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds