Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 112.85187 * 2 1 4 4 C 1.53779 * 113.61005 * 228.80801 * 2 1 3 5 5 C 1.53787 * 87.07963 * 219.93029 * 4 2 1 6 6 H 1.08994 * 113.61447 * 270.88515 * 5 4 2 7 7 N 1.46496 * 113.61210 * 139.97940 * 5 4 2 8 8 C 1.34777 * 120.00006 * 104.51086 * 7 5 4 9 9 O 1.21693 * 119.99864 * 359.97438 * 8 7 5 10 10 C 1.46378 * 120.00241 * 180.02562 * 8 7 5 11 11 H 1.07997 * 119.99873 * 359.97438 * 10 8 7 12 12 C 1.40045 * 119.99910 * 179.97438 * 10 8 7 13 13 N 1.30667 * 120.00438 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99804 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47320 * 60.00001 * 14 12 10 16 16 H 1.48500 * 109.47195 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47251 * 300.00125 * 14 12 10 18 18 C 1.53779 * 113.69268 * 131.27039 * 2 1 3 19 19 H 1.09004 * 113.61501 * 254.53633 * 18 2 1 20 20 C 1.52998 * 113.61251 * 25.44348 * 18 2 1 21 21 H 1.09000 * 109.47285 * 171.69336 * 1 2 3 22 22 H 1.09000 * 109.46654 * 291.68876 * 1 2 3 23 23 H 1.09001 * 109.47135 * 51.68403 * 1 2 3 24 24 H 1.08997 * 113.61646 * 105.38661 * 4 2 1 25 25 H 1.08998 * 113.69354 * 334.48969 * 4 2 1 26 26 H 0.97005 * 120.00378 * 284.50666 * 7 5 4 27 27 H 0.96998 * 120.00414 * 180.02562 * 13 12 10 28 28 H 1.09000 * 109.47004 * 177.00548 * 20 18 2 29 29 H 1.09004 * 109.47300 * 296.99529 * 20 18 2 30 30 H 1.08995 * 109.47631 * 57.00095 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0045 0.0000 4 6 2.1459 -0.9280 -1.0603 5 6 3.1937 -1.3119 -0.0021 6 1 4.0717 -0.6661 -0.0027 7 7 3.5338 -2.7368 -0.0030 8 6 4.7036 -3.1501 -0.5295 9 8 5.4771 -2.3396 -1.0046 10 6 5.0432 -4.5739 -0.5310 11 1 4.3566 -5.2933 -0.1098 12 6 6.2586 -5.0033 -1.0786 13 7 7.0892 -4.1331 -1.5887 14 14 6.6923 -6.8203 -1.0798 15 1 5.6673 -7.5734 -1.8464 16 1 8.0227 -7.0112 -1.7111 17 1 6.7317 -7.3207 0.3179 18 6 2.1480 -0.9288 1.0584 19 1 2.5673 -0.3985 1.9134 20 6 1.2350 -2.0872 1.4652 21 1 -0.3634 -1.0169 -0.1485 22 1 -0.3633 0.3798 0.9549 23 1 -0.3633 0.6372 -0.8063 24 1 2.5636 -0.3970 -1.9157 25 1 1.4960 -1.7534 -1.3507 26 1 2.9171 -3.3830 0.3753 27 1 7.9308 -4.4306 -1.9683 28 1 1.7571 -2.7295 2.1745 29 1 0.3317 -1.6920 1.9299 30 1 0.9658 -2.6654 0.5814 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307590859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = -59.656326 kcal Electronic energy + Delta-G solvation = -12646.763907 eV Core-core repulsion = 10440.994525 eV Total energy + Delta-G solvation = -2205.769383 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.96728 -38.61709 -34.74476 -33.79902 -30.35251 -30.12054 -28.18634 -24.72348 -23.67136 -21.35244 -19.65085 -18.75185 -17.54800 -16.90906 -16.36997 -15.91953 -15.08001 -14.64307 -14.40113 -13.80911 -13.44736 -13.25527 -13.16382 -12.98239 -12.77344 -12.67096 -12.56792 -12.11824 -12.07263 -11.49132 -11.09304 -10.94344 -10.88799 -9.83947 -9.34422 -8.28663 -6.86186 1.39223 1.43216 1.54921 2.24924 2.46940 3.21419 3.53446 3.61717 3.70800 3.96352 4.12523 4.54362 4.58664 4.61824 4.70724 4.89504 4.97422 4.99187 5.10034 5.14673 5.23406 5.30843 5.35594 5.53803 5.64658 5.89795 6.25475 6.36377 6.86251 7.59181 8.51077 8.68480 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.070770 B = 0.008321 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.554286 B = 3364.202024 C = 3575.199104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 H 0.091 0.909 4 C -0.149 4.149 5 C 0.116 3.884 6 H 0.060 0.940 7 N -0.742 5.742 8 C 0.536 3.464 9 O -0.636 6.636 10 C -0.577 4.577 11 H 0.087 0.913 12 C 0.027 3.973 13 N -0.824 5.824 14 Si 0.999 3.001 15 H -0.254 1.254 16 H -0.274 1.274 17 H -0.253 1.253 18 C -0.106 4.106 19 H 0.078 0.922 20 C -0.130 4.130 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.394 0.606 27 H 0.274 0.726 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.629 2.055 5.073 13.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.188 4.188 5 C 0.010 3.990 6 H 0.078 0.922 7 N -0.395 5.395 8 C 0.340 3.660 9 O -0.524 6.524 10 C -0.614 4.614 11 H 0.105 0.895 12 C -0.187 4.187 13 N -0.454 5.454 14 Si 0.818 3.182 15 H -0.178 1.178 16 H -0.199 1.199 17 H -0.177 1.177 18 C -0.126 4.126 19 H 0.096 0.904 20 C -0.187 4.187 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.101 0.899 26 H 0.230 0.770 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.917 2.689 4.657 13.074 hybrid contribution 0.517 -0.716 -0.159 0.897 sum -11.401 1.972 4.498 12.414 Atomic orbital electron populations 1.21662 0.92563 1.02273 1.02430 1.22323 0.97115 0.97377 0.94576 0.89035 1.23526 0.98320 0.99669 0.97308 1.22232 0.95220 0.83709 0.97877 0.92170 1.45778 1.21227 1.06894 1.65578 1.18662 0.80031 0.90103 0.77231 1.90536 1.52220 1.57218 1.52388 1.21444 1.05489 0.91780 1.42680 0.89490 1.27010 0.94956 1.05039 0.91742 1.70191 1.08237 1.38020 1.28914 0.85057 0.78044 0.75162 0.79915 1.17762 1.19870 1.17740 1.22804 0.95480 0.97658 0.96609 0.90371 1.21532 0.99249 0.96711 1.01246 0.92217 0.91027 0.92139 0.93702 0.89939 0.77049 0.91588 0.92633 0.89627 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.62 71.98 0.62 -1.91 16 2 C -0.10 -2.44 4.30 -10.27 -0.04 -2.49 16 3 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 4 C -0.15 -5.10 7.08 31.12 0.22 -4.88 16 5 C 0.12 4.70 4.08 45.52 0.19 4.89 16 6 H 0.06 2.88 7.54 -2.39 -0.02 2.86 16 7 N -0.74 -34.69 5.25 -444.31 -2.33 -37.03 16 8 C 0.54 32.28 7.75 86.36 0.67 32.95 16 9 O -0.64 -44.30 14.66 -4.32 -0.06 -44.36 16 10 C -0.58 -33.68 9.54 24.83 0.24 -33.44 16 11 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 12 C 0.03 1.56 5.50 85.30 0.47 2.03 16 13 N -0.82 -51.85 11.83 21.83 0.26 -51.59 16 14 Si 1.00 41.66 29.56 68.60 2.03 43.69 16 15 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 18 C -0.11 -3.05 4.44 -10.27 -0.05 -3.09 16 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 20 C -0.13 -3.11 7.01 71.98 0.50 -2.61 16 21 H 0.06 1.13 6.98 -2.39 -0.02 1.12 16 22 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.08 2.73 7.50 -2.39 -0.02 2.71 16 26 H 0.39 15.97 6.80 -92.70 -0.63 15.34 16 27 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 28 H 0.05 1.36 8.04 -2.39 -0.02 1.34 16 29 H 0.08 1.56 7.54 -2.39 -0.02 1.54 16 30 H 0.05 1.38 6.61 -2.39 -0.02 1.36 16 Total: -1.00 -75.97 248.80 3.20 -72.77 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.50 Total: 25.06 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 2.82 Total: -8.55 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -2.08 Total: -88.62 kcal Atomic # 8 Polarization: -44.30 SS G_CDS: -0.06 Total: -44.36 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -75.97 3.20 -72.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307590859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.115 kcal (2) G-P(sol) polarization free energy of solvation -75.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds