Wall clock time and date at job start Mon Mar 30 2020 02:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.21131 * 2 1 4 4 C 1.54479 * 110.31955 * 238.01875 * 2 1 3 5 5 C 1.54634 * 101.76095 * 215.54775 * 4 2 1 6 6 C 1.51288 * 104.26006 * 24.57884 * 5 4 2 7 7 O 1.21277 * 124.94250 * 164.01369 * 6 5 4 8 8 N 1.34419 * 110.11095 * 344.14901 * 6 5 4 9 9 C 1.46499 * 124.35021 * 179.43859 * 8 6 5 10 10 C 1.53001 * 109.47073 * 269.69594 * 9 8 6 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08999 * 109.47482 * 298.07387 * 1 2 3 20 20 H 1.09007 * 109.47079 * 58.07264 * 1 2 3 21 21 H 1.08992 * 109.47341 * 178.07029 * 1 2 3 22 22 H 1.09002 * 110.97016 * 333.66338 * 4 2 1 23 23 H 1.08996 * 110.96852 * 97.42742 * 4 2 1 24 24 H 1.08998 * 110.48491 * 143.47674 * 5 4 2 25 25 H 1.08997 * 110.48515 * 265.98570 * 5 4 2 26 26 H 1.09002 * 109.47239 * 149.69793 * 9 8 6 27 27 H 1.08998 * 109.47134 * 29.69223 * 9 8 6 28 28 H 1.09007 * 109.46922 * 59.99533 * 10 9 8 29 29 H 1.09003 * 109.46836 * 300.00289 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0665 -0.7673 -1.2288 5 6 3.3310 -1.4438 -0.6505 6 6 3.0573 -1.5380 0.8344 7 8 3.6672 -2.2434 1.6098 8 7 2.0378 -0.7282 1.1687 9 6 1.5061 -0.5860 2.5264 10 6 0.3826 -1.6018 2.7430 11 6 -0.1640 -1.4559 4.1398 12 1 0.2483 -0.7128 4.8062 13 6 -1.1906 -2.2713 4.5670 14 7 -1.6931 -3.1759 3.7553 15 14 -1.8676 -2.0909 6.2986 16 1 -1.1125 -2.9775 7.2202 17 1 -1.7256 -0.6806 6.7413 18 1 -3.3030 -2.4715 6.3109 19 1 -0.3634 0.4836 0.9067 20 1 -0.3633 0.5435 -0.8723 21 1 -0.3633 -1.0270 -0.0346 22 1 1.3465 -1.5118 -1.5686 23 1 2.3253 -0.0807 -2.0348 24 1 3.4630 -2.4366 -1.0806 25 1 4.2114 -0.8286 -0.8360 26 1 1.1147 0.4226 2.6595 27 1 2.3022 -0.7652 3.2490 28 1 0.7740 -2.6104 2.6098 29 1 -0.4135 -1.4226 2.0203 30 1 -2.4150 -3.7497 4.0560 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307754794.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:54 Heat of formation + Delta-G solvation = -50.566878 kcal Electronic energy + Delta-G solvation = -12723.128518 eV Core-core repulsion = 10517.753284 eV Total energy + Delta-G solvation = -2205.375235 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.99053 -36.26151 -33.90177 -32.11532 -30.26496 -28.99692 -24.79181 -24.34724 -21.29337 -21.04596 -18.70571 -16.45981 -16.31562 -15.53088 -14.84999 -14.45134 -13.71800 -13.32913 -13.25284 -12.44749 -12.34545 -12.26939 -11.97084 -11.77188 -11.17227 -10.92550 -10.79792 -10.73120 -10.63151 -9.90596 -9.83682 -9.29900 -9.07276 -8.34380 -7.97925 -6.00640 -4.03597 3.11551 3.32729 3.38560 3.41192 3.64492 4.46884 4.62663 4.68621 4.92959 5.28081 5.35507 5.49322 5.58234 5.76485 5.78321 6.00670 6.07529 6.12470 6.23531 6.53117 6.60191 6.86231 7.08871 7.59434 7.71166 7.92283 8.00543 8.36751 8.75437 9.03375 9.60054 11.10703 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051983 B = 0.009084 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.508663 B = 3081.478321 C = 3305.245530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.073 0.927 4 C -0.128 4.128 5 C -0.156 4.156 6 C 0.509 3.491 7 O -0.540 6.540 8 N -0.607 5.607 9 C 0.127 3.873 10 C 0.009 3.991 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.274 1.274 18 H -0.286 1.286 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.018 0.982 29 H 0.025 0.975 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 7.132 -10.373 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.024 3.976 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.196 4.196 6 C 0.296 3.704 7 O -0.417 6.417 8 N -0.341 5.341 9 C 0.007 3.993 10 C -0.029 4.029 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.198 1.198 18 H -0.212 1.212 19 H 0.087 0.913 20 H 0.079 0.921 21 H 0.087 0.913 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.920 6.648 -9.885 12.889 hybrid contribution -0.533 0.024 0.941 1.082 sum 4.387 6.672 -8.944 11.990 Atomic orbital electron populations 1.22157 0.93715 1.03480 1.02303 1.21625 0.95516 0.95362 0.85106 0.90946 1.22692 0.96936 0.99966 0.97022 1.22336 0.99402 1.03411 0.94464 1.20765 0.79922 0.79354 0.90363 1.90697 1.52819 1.40962 1.57256 1.48650 1.33630 1.42299 1.09502 1.21754 0.98016 1.00630 0.78866 1.19516 0.92268 0.94115 0.97022 1.21114 1.17808 1.18807 0.98338 0.92575 1.24996 0.96651 0.95156 0.97467 1.69975 1.26465 1.21157 1.35589 0.86567 0.78085 0.78427 0.84752 1.20612 1.19841 1.21219 0.91258 0.92101 0.91301 0.89921 0.89768 0.88590 0.88566 0.91802 0.91331 0.96312 0.95627 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 7.89 37.16 0.29 -1.98 16 2 C 0.13 1.78 3.91 -67.01 -0.26 1.51 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -1.43 6.69 -25.10 -0.17 -1.60 16 5 C -0.16 -2.04 6.86 -26.74 -0.18 -2.22 16 6 C 0.51 9.82 8.02 -10.86 -0.09 9.73 16 7 O -0.54 -12.89 17.59 5.56 0.10 -12.79 16 8 N -0.61 -11.33 2.79 -164.88 -0.46 -11.79 16 9 C 0.13 2.77 5.13 -4.04 -0.02 2.75 16 10 C 0.01 0.23 5.13 -27.89 -0.14 0.08 16 11 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H 0.07 1.11 7.20 -51.93 -0.37 0.74 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.07 1.14 7.46 -51.93 -0.39 0.75 16 22 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.26 7.89 -51.93 -0.41 0.85 16 27 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 28 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.03 0.68 5.98 -51.93 -0.31 0.37 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 251.98 15.07 3.80 3.80 Total: -1.00 -33.41 251.98 -6.21 -39.62 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -4.38 Total: -3.91 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.98 Total: -5.37 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.28 Total: -38.22 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.10 Total: -12.79 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.41 -6.21 -39.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307754794.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.948 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds