Wall clock time and date at job start Mon Mar 30 2020 02:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.21131 * 2 1 4 4 C 1.54479 * 110.31955 * 238.01875 * 2 1 3 5 5 C 1.54634 * 101.76095 * 215.54775 * 4 2 1 6 6 C 1.51288 * 104.26006 * 24.57884 * 5 4 2 7 7 O 1.21277 * 124.94250 * 164.01369 * 6 5 4 8 8 N 1.34419 * 110.11095 * 344.14901 * 6 5 4 9 9 C 1.46499 * 124.35021 * 179.43859 * 8 6 5 10 10 C 1.53001 * 109.47073 * 269.69594 * 9 8 6 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08999 * 109.47482 * 298.07387 * 1 2 3 20 20 H 1.09007 * 109.47079 * 58.07264 * 1 2 3 21 21 H 1.08992 * 109.47341 * 178.07029 * 1 2 3 22 22 H 1.09002 * 110.97016 * 333.66338 * 4 2 1 23 23 H 1.08996 * 110.96852 * 97.42742 * 4 2 1 24 24 H 1.08998 * 110.48491 * 143.47674 * 5 4 2 25 25 H 1.08997 * 110.48515 * 265.98570 * 5 4 2 26 26 H 1.09002 * 109.47239 * 149.69793 * 9 8 6 27 27 H 1.08998 * 109.47134 * 29.69223 * 9 8 6 28 28 H 1.09007 * 109.46922 * 59.99533 * 10 9 8 29 29 H 1.09003 * 109.46836 * 300.00289 * 10 9 8 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9066 1.0229 0.0000 4 6 2.0665 -0.7673 -1.2288 5 6 3.3310 -1.4438 -0.6505 6 6 3.0573 -1.5380 0.8344 7 8 3.6672 -2.2434 1.6098 8 7 2.0378 -0.7282 1.1687 9 6 1.5061 -0.5860 2.5264 10 6 0.3826 -1.6018 2.7430 11 6 -0.1640 -1.4559 4.1398 12 1 0.2483 -0.7128 4.8062 13 6 -1.1906 -2.2713 4.5670 14 7 -1.6931 -3.1759 3.7553 15 14 -1.8676 -2.0909 6.2986 16 1 -1.1125 -2.9775 7.2202 17 1 -1.7256 -0.6806 6.7413 18 1 -3.3030 -2.4715 6.3109 19 1 -0.3634 0.4836 0.9067 20 1 -0.3633 0.5435 -0.8723 21 1 -0.3633 -1.0270 -0.0346 22 1 1.3465 -1.5118 -1.5686 23 1 2.3253 -0.0807 -2.0348 24 1 3.4630 -2.4366 -1.0806 25 1 4.2114 -0.8286 -0.8360 26 1 1.1147 0.4226 2.6595 27 1 2.3022 -0.7652 3.2490 28 1 0.7740 -2.6104 2.6098 29 1 -0.4135 -1.4226 2.0203 30 1 -2.4150 -3.7497 4.0560 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307754794.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:54 Heat of formation + Delta-G solvation = -73.461533 kcal Electronic energy + Delta-G solvation = -12724.121305 eV Core-core repulsion = 10517.753284 eV Total energy + Delta-G solvation = -2206.368021 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.38122 -37.78873 -35.82473 -33.92607 -31.51923 -30.77729 -26.77009 -25.49384 -23.26638 -22.21577 -20.20959 -18.55510 -17.60560 -17.16078 -16.56305 -16.22798 -15.12876 -14.75141 -14.64230 -14.15532 -14.13059 -13.74272 -13.29642 -13.12770 -12.90129 -12.69272 -12.54933 -11.98640 -11.89185 -11.76368 -11.68380 -11.32475 -10.74155 -10.58600 -9.56580 -8.24316 -6.36783 1.37450 1.40069 1.50682 1.63772 2.20804 2.41415 3.08986 3.46077 3.65395 3.97584 4.23897 4.31679 4.42877 4.50101 4.63076 4.79842 4.88361 4.90337 4.98354 5.12169 5.21726 5.39312 5.41163 5.52045 5.64030 5.83833 6.16104 6.37786 6.78553 7.25183 7.32661 8.87681 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051983 B = 0.009084 C = 0.008469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.508663 B = 3081.478321 C = 3305.245530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.119 3.881 3 H 0.106 0.894 4 C -0.114 4.114 5 C -0.142 4.142 6 C 0.487 3.513 7 O -0.602 6.602 8 N -0.615 5.615 9 C 0.141 3.859 10 C 0.021 3.979 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.277 1.277 17 H -0.258 1.258 18 H -0.278 1.278 19 H 0.045 0.955 20 H 0.102 0.898 21 H 0.035 0.965 22 H 0.079 0.921 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.046 0.954 28 H -0.033 1.033 29 H 0.017 0.983 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 9.044 -11.551 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.124 0.876 4 C -0.151 4.151 5 C -0.181 4.181 6 C 0.277 3.723 7 O -0.484 6.484 8 N -0.347 5.347 9 C 0.019 3.981 10 C -0.016 4.016 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.203 1.203 17 H -0.181 1.181 18 H -0.203 1.203 19 H 0.064 0.936 20 H 0.120 0.880 21 H 0.055 0.945 22 H 0.098 0.902 23 H 0.152 0.848 24 H 0.123 0.877 25 H 0.147 0.853 26 H 0.105 0.895 27 H 0.065 0.935 28 H -0.015 1.015 29 H 0.035 0.965 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.923 8.598 -11.107 14.884 hybrid contribution -0.550 -0.576 1.268 1.498 sum 4.373 8.022 -9.839 13.426 Atomic orbital electron populations 1.22117 0.94329 1.01714 1.03076 1.22084 0.95050 0.96918 0.84274 0.87614 1.22770 0.95380 1.00288 0.96694 1.22367 1.01718 1.05028 0.89026 1.22048 0.79207 0.78063 0.93015 1.90647 1.54894 1.43278 1.59591 1.48825 1.33551 1.42723 1.09596 1.21292 0.95699 1.00103 0.81011 1.19325 0.93335 0.92623 0.96365 1.21575 1.18209 1.19248 0.99451 0.91805 1.26006 0.96909 0.94560 1.02254 1.70115 1.27049 1.22029 1.37955 0.85388 0.77410 0.79149 0.78740 1.20311 1.18145 1.20347 0.93555 0.87961 0.94543 0.90218 0.84804 0.87687 0.85265 0.89484 0.93505 1.01511 0.96462 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 7.89 71.98 0.57 -3.63 16 2 C 0.12 2.97 3.91 45.44 0.18 3.15 16 3 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.11 -2.06 6.69 31.65 0.21 -1.85 16 5 C -0.14 -3.30 6.86 30.59 0.21 -3.09 16 6 C 0.49 18.86 8.02 87.90 0.71 19.56 16 7 O -0.60 -30.04 17.59 -3.02 -0.05 -30.09 16 8 N -0.61 -22.87 2.79 -794.16 -2.22 -25.09 16 9 C 0.14 6.30 5.13 86.38 0.44 6.74 16 10 C 0.02 1.19 5.13 29.85 0.15 1.34 16 11 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 12 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 15 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H 0.05 1.45 7.20 -2.39 -0.02 1.43 16 20 H 0.10 1.90 8.14 -2.38 -0.02 1.89 16 21 H 0.04 1.21 7.46 -2.39 -0.02 1.19 16 22 H 0.08 1.53 7.90 -2.39 -0.02 1.51 16 23 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.09 3.44 7.89 -2.39 -0.02 3.43 16 27 H 0.05 2.26 7.92 -2.39 -0.02 2.25 16 28 H -0.03 -2.18 8.14 -2.38 -0.02 -2.20 16 29 H 0.02 0.96 5.98 -2.39 -0.01 0.95 16 30 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.42 251.98 4.31 -73.12 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.11 Total: 1.91 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.16 Total: -9.15 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -1.93 Total: -83.04 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.05 Total: -30.09 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.42 4.31 -73.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307754794.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.346 kcal (2) G-P(sol) polarization free energy of solvation -77.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds