Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.21722 * 2 1 4 4 C 1.54478 * 110.31598 * 121.98018 * 2 1 3 5 5 C 1.54622 * 101.76632 * 93.62364 * 4 2 1 6 6 C 1.51294 * 104.25833 * 24.57654 * 5 4 2 7 7 O 1.21280 * 124.94152 * 164.00731 * 6 5 4 8 8 N 1.34415 * 110.11067 * 344.14736 * 6 5 4 9 9 C 1.46499 * 124.35042 * 179.43772 * 8 6 5 10 10 C 1.53000 * 109.46840 * 269.70135 * 9 8 6 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99776 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99923 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.46794 * 89.99626 * 15 13 11 17 17 H 1.48502 * 109.47140 * 209.99610 * 15 13 11 18 18 H 1.48501 * 109.46982 * 329.99723 * 15 13 11 19 19 H 1.09005 * 109.47048 * 181.93096 * 1 2 3 20 20 H 1.08996 * 109.46992 * 301.93057 * 1 2 3 21 21 H 1.09000 * 109.47107 * 61.92863 * 1 2 3 22 22 H 1.09003 * 110.96443 * 211.73898 * 4 2 1 23 23 H 1.09002 * 110.97326 * 335.46583 * 4 2 1 24 24 H 1.09002 * 110.49112 * 143.47260 * 5 4 2 25 25 H 1.09001 * 110.48713 * 266.11738 * 5 4 2 26 26 H 1.09002 * 109.47391 * 149.69804 * 9 8 6 27 27 H 1.09001 * 109.46813 * 29.69861 * 9 8 6 28 28 H 1.09001 * 109.47194 * 299.99493 * 10 9 8 29 29 H 1.08992 * 109.47399 * 59.99666 * 10 9 8 30 30 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0228 0.0000 4 6 2.0664 -0.7673 1.2288 5 6 2.2656 -2.1877 0.6513 6 6 2.4472 -1.9640 -0.8339 7 8 2.8990 -2.7800 -1.6091 8 7 2.0379 -0.7283 -1.1687 9 6 2.0866 -0.1809 -2.5267 10 6 3.4271 0.5238 -2.7446 11 6 3.4774 1.0864 -4.1418 12 1 2.6372 0.9548 -4.8075 13 6 4.5957 1.7699 -4.5699 14 7 4.6399 2.2604 -5.7893 15 14 6.0487 1.9980 -3.4182 16 1 6.9890 0.8596 -3.5762 17 1 6.7472 3.2664 -3.7477 18 1 5.5649 2.0493 -2.0151 19 1 -0.3633 -1.0271 0.0346 20 1 -0.3633 0.5435 0.8721 21 1 -0.3633 0.4836 -0.9068 22 1 3.0136 -0.3476 1.5677 23 1 1.3335 -0.7728 2.0357 24 1 3.1525 -2.6534 1.0811 25 1 1.3840 -2.8016 0.8357 26 1 1.2745 0.5339 -2.6597 27 1 1.9801 -0.9904 -3.2487 28 1 3.5336 1.3334 -2.0226 29 1 4.2391 -0.1909 -2.6116 30 1 5.4265 2.7416 -6.0903 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307754795.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -71.273826 kcal Electronic energy + Delta-G solvation = -12682.631882 eV Core-core repulsion = 10476.358726 eV Total energy + Delta-G solvation = -2206.273155 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43244 -37.77904 -35.90543 -34.09822 -31.22926 -31.11793 -26.86425 -25.84383 -23.04156 -22.15534 -20.09119 -19.09078 -17.51938 -16.89866 -16.59637 -16.29200 -15.04903 -14.97325 -14.82817 -14.71440 -13.97407 -13.65446 -13.50768 -13.13286 -13.00297 -12.82668 -12.35295 -12.04988 -11.80017 -11.72691 -11.68275 -11.53856 -10.85203 -10.74860 -9.63299 -8.36293 -6.41618 1.29715 1.31876 1.43065 1.62037 2.16361 2.29885 2.98465 3.45073 3.62089 4.03032 4.18725 4.27093 4.39201 4.45912 4.63098 4.74617 4.76523 4.91563 4.94552 5.13365 5.14566 5.18102 5.27591 5.41372 5.48754 5.74958 6.17325 6.33674 6.64449 7.20665 7.24990 8.80074 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.009665 C = 0.009473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.897168 B = 2896.372728 C = 2955.155386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 H 0.087 0.913 4 C -0.113 4.113 5 C -0.142 4.142 6 C 0.490 3.510 7 O -0.599 6.599 8 N -0.615 5.615 9 C 0.146 3.854 10 C -0.013 4.013 11 C -0.535 4.535 12 H 0.038 0.962 13 C 0.010 3.990 14 N -0.945 5.945 15 Si 0.950 3.050 16 H -0.277 1.277 17 H -0.274 1.274 18 H -0.247 1.247 19 H 0.060 0.940 20 H 0.100 0.900 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.129 0.871 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.029 0.971 29 H -0.003 1.003 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 -3.321 19.235 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.008 3.992 3 H 0.105 0.895 4 C -0.150 4.150 5 C -0.182 4.182 6 C 0.280 3.720 7 O -0.480 6.480 8 N -0.347 5.347 9 C 0.024 3.976 10 C -0.051 4.051 11 C -0.574 4.574 12 H 0.057 0.943 13 C -0.188 4.188 14 N -0.585 5.585 15 Si 0.773 3.227 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.170 1.170 19 H 0.079 0.921 20 H 0.118 0.882 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.148 0.852 24 H 0.127 0.873 25 H 0.142 0.858 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.016 0.984 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.816 -3.583 18.651 20.178 hybrid contribution 0.808 0.187 -0.742 1.112 sum -6.009 -3.396 17.909 19.193 Atomic orbital electron populations 1.22130 0.92959 1.02845 1.03258 1.22057 0.95804 0.97062 0.84310 0.89533 1.22713 1.03854 0.91972 0.96465 1.22366 1.06184 1.00537 0.89097 1.22044 0.75788 0.81218 0.92968 1.90667 1.48237 1.49593 1.59551 1.48786 1.61323 1.15179 1.09390 1.21109 0.98320 0.96991 0.81176 1.19728 0.94599 0.95285 0.95501 1.21286 1.02729 1.34974 0.98380 0.94325 1.25946 1.01571 0.94552 0.96728 1.70044 1.30976 1.38359 1.19104 0.85666 0.78783 0.77845 0.80371 1.20229 1.19946 1.17014 0.92094 0.88165 0.93565 0.89500 0.85232 0.87273 0.85784 0.89667 0.93425 0.95225 0.98412 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.47 71.98 0.68 -2.01 16 2 C 0.11 2.47 3.70 45.44 0.17 2.64 16 3 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.11 -1.72 6.70 31.65 0.21 -1.50 16 5 C -0.14 -2.93 6.85 30.59 0.21 -2.72 16 6 C 0.49 17.39 8.02 87.90 0.71 18.09 16 7 O -0.60 -27.94 17.59 -3.03 -0.05 -27.99 16 8 N -0.61 -20.99 2.57 -794.15 -2.04 -23.04 16 9 C 0.15 6.21 5.87 86.38 0.51 6.72 16 10 C -0.01 -0.64 4.37 29.85 0.13 -0.51 16 11 C -0.54 -32.05 9.66 25.60 0.25 -31.80 16 12 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 13 C 0.01 0.58 5.47 84.65 0.46 1.05 16 14 N -0.94 -60.33 13.96 21.45 0.30 -60.03 16 15 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 19 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 20 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.13 0.98 7.90 -2.39 -0.02 0.96 16 24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 27 H 0.05 2.25 7.92 -2.39 -0.02 2.24 16 28 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 29 H 0.00 -0.13 7.57 -2.39 -0.02 -0.15 16 30 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -77.08 254.47 4.45 -72.62 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.04 Total: 0.61 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.32 Total: -10.04 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.74 Total: -83.06 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -77.08 4.45 -72.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307754795.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.351 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds