Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.56132 * 2 1 4 4 C 1.52995 * 117.49852 * 214.30616 * 2 1 3 5 5 C 1.53003 * 60.00286 * 252.51107 * 4 2 1 6 6 H 1.09003 * 117.49627 * 107.51100 * 5 4 2 7 7 N 1.46496 * 117.49948 * 252.51541 * 5 4 2 8 8 C 1.34776 * 120.00065 * 223.60574 * 7 5 4 9 9 O 1.21288 * 119.99808 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00336 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47192 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47188 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99983 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 269.99914 * 16 14 12 18 18 H 1.48503 * 109.47399 * 29.99403 * 16 14 12 19 19 H 1.48498 * 109.47295 * 150.00010 * 16 14 12 20 20 H 1.08999 * 109.46811 * 274.31145 * 1 2 3 21 21 H 1.08997 * 109.47152 * 34.31478 * 1 2 3 22 22 H 1.09005 * 109.46972 * 154.31422 * 1 2 3 23 23 H 1.08997 * 117.49907 * 145.02172 * 4 2 1 24 24 H 1.09003 * 117.52056 * 359.97438 * 4 2 1 25 25 H 0.97000 * 120.00510 * 43.60460 * 7 5 4 26 26 H 1.08996 * 109.46838 * 60.00476 * 10 8 7 27 27 H 1.08997 * 109.47440 * 300.00051 * 10 8 7 28 28 H 1.09004 * 109.47223 * 59.99744 * 11 10 8 29 29 H 1.09010 * 109.47071 * 300.00096 * 11 10 8 30 30 H 0.97000 * 119.99462 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 1.6115 -1.8587 1.2684 7 7 3.4932 -0.7904 1.4415 8 6 3.8987 -1.5162 2.5024 9 8 3.2233 -2.4432 2.8968 10 6 5.1917 -1.1766 3.1979 11 6 5.4160 -2.1467 4.3596 12 6 6.7087 -1.8067 5.0554 13 1 7.3104 -0.9816 4.7040 14 6 7.1239 -2.5498 6.1401 15 7 6.3915 -3.5549 6.5678 16 14 8.7267 -2.1288 7.0023 17 1 9.8401 -2.8839 6.3734 18 1 8.9863 -0.6717 6.8809 19 1 8.6281 -2.4962 8.4377 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8488 -0.5793 22 1 -0.3633 -0.9262 -0.4454 23 1 3.1715 -0.8753 -1.2682 24 1 1.6116 -1.8590 -1.2679 25 1 4.0336 -0.0493 1.1259 26 1 5.1418 -0.1570 3.5800 27 1 6.0172 -1.2598 2.4910 28 1 5.4660 -3.1662 3.9771 29 1 4.5905 -2.0639 5.0666 30 1 5.5591 -3.7732 6.1203 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307962775.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -38.757921 kcal Electronic energy + Delta-G solvation = -11988.778938 eV Core-core repulsion = 9783.915778 eV Total energy + Delta-G solvation = -2204.863160 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.48849 -37.46119 -33.77053 -32.98082 -30.74076 -28.36591 -25.28576 -22.63197 -21.34822 -20.83550 -19.77595 -17.02626 -16.48450 -16.04043 -14.91562 -14.05095 -14.02200 -13.67949 -13.42089 -13.00430 -12.60665 -12.13926 -12.10194 -11.66197 -11.48709 -11.02722 -10.79687 -10.23940 -10.11749 -10.10599 -9.93847 -9.30045 -8.55692 -8.52145 -8.26917 -6.30939 -4.01020 3.03293 3.34508 3.46084 3.50011 3.65574 3.80756 4.58332 4.64530 4.72975 4.88176 5.11681 5.32342 5.46906 5.58694 5.60171 5.63739 5.82979 5.95874 6.08384 6.10710 6.12388 6.69677 6.74394 7.52841 7.57915 7.78706 8.20736 8.50899 8.66912 8.93287 9.72774 11.10107 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.097305 B = 0.005804 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.686719 B = 4823.318397 C = 4942.998583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.168 4.168 3 H 0.104 0.896 4 C -0.193 4.193 5 C 0.088 3.912 6 H 0.134 0.866 7 N -0.715 5.715 8 C 0.513 3.487 9 O -0.536 6.536 10 C -0.123 4.123 11 C 0.023 3.977 12 C -0.609 4.609 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.911 5.911 16 Si 1.073 2.927 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.284 1.284 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.399 0.601 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 8.387 -13.519 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.187 4.187 3 H 0.122 0.878 4 C -0.232 4.232 5 C -0.019 4.019 6 H 0.152 0.848 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.411 6.411 10 C -0.162 4.162 11 C -0.014 4.014 12 C -0.647 4.647 13 H 0.068 0.932 14 C -0.189 4.189 15 N -0.547 5.547 16 Si 0.902 3.098 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.210 1.210 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.233 0.767 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.769 7.243 -11.934 15.514 hybrid contribution -0.723 0.923 -1.637 2.013 sum -7.492 8.166 -13.570 17.521 Atomic orbital electron populations 1.21338 0.92401 1.01959 1.02111 1.22792 0.95817 0.95002 1.05121 0.87770 1.23600 1.02629 1.01487 0.95472 1.21678 0.88861 1.00662 0.90707 0.84792 1.45634 1.22802 1.35462 1.32688 1.21595 0.88231 0.81280 0.78709 1.90651 1.56605 1.29389 1.64502 1.21729 0.91926 1.02897 0.99697 1.19029 0.97130 0.93760 0.91486 1.22057 1.07151 1.18435 1.17074 0.93219 1.25856 1.03703 0.93847 0.95525 1.70706 1.14682 1.27359 1.41973 0.83493 0.74616 0.75322 0.76403 1.21486 1.21522 1.20993 0.91990 0.92133 0.92358 0.88678 0.88234 0.76734 0.89978 0.89988 0.96689 0.96686 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.19 37.16 0.38 -0.67 16 2 C -0.17 -1.68 6.33 -90.62 -0.57 -2.25 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.19 -1.99 10.10 -26.73 -0.27 -2.26 16 5 C 0.09 1.16 6.15 -67.93 -0.42 0.74 16 6 H 0.13 2.03 7.40 -51.93 -0.38 1.65 16 7 N -0.71 -10.47 5.57 -53.80 -0.30 -10.77 16 8 C 0.51 10.12 7.83 -10.99 -0.09 10.03 16 9 O -0.54 -12.83 15.55 5.55 0.09 -12.75 16 10 C -0.12 -2.55 5.64 -27.89 -0.16 -2.70 16 11 C 0.02 0.64 3.57 -27.89 -0.10 0.54 16 12 C -0.61 -17.70 9.11 -34.44 -0.31 -18.01 16 13 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 14 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 15 N -0.91 -29.06 13.65 55.43 0.76 -28.31 16 16 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 23 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 25 H 0.40 4.59 8.83 -40.82 -0.36 4.23 16 26 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 27 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.01 0.44 7.97 -51.93 -0.41 0.02 16 29 H 0.01 0.44 7.97 -51.92 -0.41 0.02 16 30 H 0.27 8.82 7.22 -40.82 -0.29 8.53 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -34.07 262.30 -6.66 -40.72 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.43 Total: 0.80 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -1.64 Total: -14.23 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.46 Total: -39.08 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.07 -6.66 -40.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962775.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.966 kcal (2) G-P(sol) polarization free energy of solvation -34.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds