Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 115.56132 * 2 1 4 4 C 1.52995 * 117.49852 * 214.30616 * 2 1 3 5 5 C 1.53003 * 60.00286 * 252.51107 * 4 2 1 6 6 H 1.09003 * 117.49627 * 107.51100 * 5 4 2 7 7 N 1.46496 * 117.49948 * 252.51541 * 5 4 2 8 8 C 1.34776 * 120.00065 * 223.60574 * 7 5 4 9 9 O 1.21288 * 119.99808 * 0.02562 * 8 7 5 10 10 C 1.50696 * 120.00336 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.47192 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47188 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00332 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99983 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00210 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00019 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46845 * 269.99914 * 16 14 12 18 18 H 1.48503 * 109.47399 * 29.99403 * 16 14 12 19 19 H 1.48498 * 109.47295 * 150.00010 * 16 14 12 20 20 H 1.08999 * 109.46811 * 274.31145 * 1 2 3 21 21 H 1.08997 * 109.47152 * 34.31478 * 1 2 3 22 22 H 1.09005 * 109.46972 * 154.31422 * 1 2 3 23 23 H 1.08997 * 117.49907 * 145.02172 * 4 2 1 24 24 H 1.09003 * 117.52056 * 359.97438 * 4 2 1 25 25 H 0.97000 * 120.00510 * 43.60460 * 7 5 4 26 26 H 1.08996 * 109.46838 * 60.00476 * 10 8 7 27 27 H 1.08997 * 109.47440 * 300.00051 * 10 8 7 28 28 H 1.09004 * 109.47223 * 59.99744 * 11 10 8 29 29 H 1.09010 * 109.47071 * 300.00096 * 11 10 8 30 30 H 0.97000 * 119.99462 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7651 6 1 1.6115 -1.8587 1.2684 7 7 3.4932 -0.7904 1.4415 8 6 3.8987 -1.5162 2.5024 9 8 3.2233 -2.4432 2.8968 10 6 5.1917 -1.1766 3.1979 11 6 5.4160 -2.1467 4.3596 12 6 6.7087 -1.8067 5.0554 13 1 7.3104 -0.9816 4.7040 14 6 7.1239 -2.5498 6.1401 15 7 6.3915 -3.5549 6.5678 16 14 8.7267 -2.1288 7.0023 17 1 9.8401 -2.8839 6.3734 18 1 8.9863 -0.6717 6.8809 19 1 8.6281 -2.4962 8.4377 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8488 -0.5793 22 1 -0.3633 -0.9262 -0.4454 23 1 3.1715 -0.8753 -1.2682 24 1 1.6116 -1.8590 -1.2679 25 1 4.0336 -0.0493 1.1259 26 1 5.1418 -0.1570 3.5800 27 1 6.0172 -1.2598 2.4910 28 1 5.4660 -3.1662 3.9771 29 1 4.5905 -2.0639 5.0666 30 1 5.5591 -3.7732 6.1203 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307962775.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -62.703948 kcal Electronic energy + Delta-G solvation = -11989.817316 eV Core-core repulsion = 9783.915778 eV Total energy + Delta-G solvation = -2205.901537 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.91547 -38.61037 -35.94735 -34.34166 -32.69991 -29.23367 -27.27933 -24.43004 -22.67705 -21.83181 -21.21142 -19.05694 -17.78580 -17.61778 -16.57571 -15.66176 -15.54814 -14.99086 -14.50496 -14.47661 -14.14014 -13.77682 -13.52830 -12.96738 -12.69121 -12.48853 -12.08953 -12.06546 -12.04068 -11.85631 -11.19827 -10.95828 -10.65213 -10.55986 -9.71052 -8.70149 -6.42056 1.52746 1.54639 1.65453 1.82302 2.08168 2.60175 2.87153 3.16769 3.70045 3.86612 3.91281 4.01948 4.30626 4.37811 4.39245 4.68106 4.86668 4.88715 4.90093 4.99225 5.14479 5.27145 5.35315 5.35605 5.52167 5.92760 6.16840 6.48560 6.52624 7.23105 7.44339 8.69763 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.097305 B = 0.005804 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.686719 B = 4823.318397 C = 4942.998583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 H 0.122 0.878 4 C -0.174 4.174 5 C 0.044 3.956 6 H 0.105 0.895 7 N -0.689 5.689 8 C 0.513 3.487 9 O -0.592 6.592 10 C -0.112 4.112 11 C 0.025 3.975 12 C -0.619 4.619 13 H 0.068 0.932 14 C -0.046 4.046 15 N -0.940 5.940 16 Si 1.128 2.872 17 H -0.271 1.271 18 H -0.260 1.260 19 H -0.286 1.286 20 H 0.053 0.947 21 H 0.081 0.919 22 H 0.061 0.939 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.418 0.582 26 H 0.106 0.894 27 H 0.106 0.894 28 H -0.021 1.021 29 H -0.021 1.021 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.303 10.746 -15.245 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 H 0.140 0.860 4 C -0.213 4.213 5 C -0.062 4.062 6 H 0.123 0.877 7 N -0.340 5.340 8 C 0.302 3.698 9 O -0.472 6.472 10 C -0.152 4.152 11 C -0.013 4.013 12 C -0.657 4.657 13 H 0.086 0.914 14 C -0.242 4.242 15 N -0.577 5.577 16 Si 0.948 3.052 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.212 1.212 20 H 0.072 0.928 21 H 0.100 0.900 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.255 0.745 26 H 0.124 0.876 27 H 0.124 0.876 28 H -0.003 1.003 29 H -0.003 1.003 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.801 9.664 -13.739 17.771 hybrid contribution -1.114 0.212 -1.186 1.641 sum -6.915 9.876 -14.925 19.186 Atomic orbital electron populations 1.21406 0.91476 1.03130 1.02107 1.22914 0.96509 0.94898 1.01899 0.86040 1.23691 1.03382 1.01537 0.92643 1.21779 0.88628 1.03234 0.92555 0.87665 1.45275 1.23277 1.34631 1.30803 1.21331 0.87627 0.81127 0.79751 1.90637 1.58038 1.32015 1.66483 1.21514 0.93604 1.02011 0.98049 1.18881 0.95546 0.93712 0.93118 1.22524 1.07604 1.18557 1.16983 0.91379 1.27699 1.06837 0.92984 0.96699 1.70872 1.14656 1.29415 1.42806 0.82825 0.70413 0.76941 0.75012 1.19655 1.18428 1.21211 0.92765 0.90038 0.92020 0.87275 0.87239 0.74486 0.87633 0.87606 1.00266 1.00274 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 10.19 71.98 0.73 -1.12 16 2 C -0.14 -2.45 6.33 -10.79 -0.07 -2.52 16 3 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 4 C -0.17 -3.10 10.10 30.59 0.31 -2.79 16 5 C 0.04 1.12 6.15 45.00 0.28 1.39 16 6 H 0.11 3.32 7.40 -2.39 -0.02 3.30 16 7 N -0.69 -19.24 5.57 -442.52 -2.46 -21.70 16 8 C 0.51 20.40 7.83 87.66 0.69 21.09 16 9 O -0.59 -29.78 15.55 -3.06 -0.05 -29.83 16 10 C -0.11 -4.59 5.64 29.85 0.17 -4.43 16 11 C 0.03 1.41 3.57 29.85 0.11 1.52 16 12 C -0.62 -36.02 9.11 25.60 0.23 -35.79 16 13 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 14 C -0.05 -2.73 5.46 84.65 0.46 -2.27 16 15 N -0.94 -61.90 13.65 21.45 0.29 -61.60 16 16 Si 1.13 50.68 29.90 68.60 2.05 52.73 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 0.88 7.90 -2.38 -0.02 0.86 16 23 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 24 H 0.11 1.76 8.05 -2.39 -0.02 1.74 16 25 H 0.42 8.39 8.83 -92.71 -0.82 7.57 16 26 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 28 H -0.02 -1.32 7.97 -2.38 -0.02 -1.34 16 29 H -0.02 -1.33 7.97 -2.38 -0.02 -1.34 16 30 H 0.25 17.23 7.22 -92.71 -0.67 16.56 16 Total: -1.00 -77.29 262.30 3.14 -74.14 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.40 Total: 11.17 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.91 Total: -24.91 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.17 Total: -83.30 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -77.29 3.14 -74.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962775.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.440 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds