Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 115.56372 * 2 1 4 4 C 1.53075 * 117.51733 * 145.70860 * 2 1 3 5 5 C 1.52997 * 59.98449 * 107.47261 * 4 2 1 6 6 H 1.09007 * 117.49410 * 107.50267 * 5 4 2 7 7 N 1.46499 * 117.50218 * 252.49868 * 5 4 2 8 8 C 1.34784 * 119.99971 * 223.74843 * 7 5 4 9 9 O 1.21274 * 119.99897 * 359.72827 * 8 7 5 10 10 C 1.50695 * 119.99635 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47331 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00041 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47211 * 120.00028 * 16 14 12 19 19 H 1.48507 * 109.47345 * 239.99791 * 16 14 12 20 20 H 1.09000 * 109.47111 * 205.69036 * 1 2 3 21 21 H 1.09005 * 109.47160 * 325.67961 * 1 2 3 22 22 H 1.08998 * 109.47667 * 85.68663 * 1 2 3 23 23 H 1.09001 * 117.50953 * 359.97438 * 4 2 1 24 24 H 1.09003 * 117.51807 * 214.95323 * 4 2 1 25 25 H 0.96999 * 119.99984 * 43.74690 * 7 5 4 26 26 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 27 27 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 28 28 H 1.08997 * 109.47244 * 300.00535 * 11 10 8 29 29 H 1.09002 * 109.46787 * 59.99910 * 11 10 8 30 30 H 0.97000 * 120.00297 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7649 5 6 2.2363 -1.1209 -0.7651 6 1 3.1713 -0.8750 -1.2687 7 7 1.3960 -2.1121 -1.4416 8 6 1.8766 -2.7924 -2.5013 9 8 3.0029 -2.5805 -2.8978 10 6 1.0123 -3.8123 -3.1967 11 6 1.7910 -4.4341 -4.3577 12 6 0.9265 -5.4536 -5.0536 13 1 -0.0777 -5.6398 -4.7027 14 6 1.4181 -6.1495 -6.1377 15 7 2.6412 -5.9231 -6.5647 16 14 0.3463 -7.4127 -7.0007 17 1 -0.9777 -7.4786 -6.3314 18 1 0.1643 -7.0198 -8.4212 19 1 1.0003 -8.7444 -6.9353 20 1 -0.3633 -0.9261 0.4455 21 1 -0.3634 0.8488 0.5794 22 1 -0.3634 0.0773 -1.0247 23 1 1.6124 -1.8593 1.2684 24 1 3.1726 -0.8761 1.2678 25 1 0.4937 -2.2788 -1.1269 26 1 0.7296 -4.5920 -2.4894 27 1 0.1147 -3.3271 -3.5803 28 1 2.0733 -3.6542 -5.0649 29 1 2.6887 -4.9192 -3.9745 30 1 2.9869 -6.4124 -7.3276 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307962776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -33.717845 kcal Electronic energy + Delta-G solvation = -12060.016564 eV Core-core repulsion = 9855.371959 eV Total energy + Delta-G solvation = -2204.644606 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.45071 -37.39736 -33.43958 -32.65369 -30.81817 -28.58511 -25.78324 -22.59474 -21.49460 -20.11855 -19.72054 -17.01730 -16.00132 -15.71590 -14.82776 -14.78229 -14.38725 -13.34795 -13.29807 -12.72961 -12.41902 -12.28004 -12.10040 -11.58279 -11.14739 -10.99836 -10.88205 -10.57882 -10.09401 -9.95211 -9.65618 -9.17206 -9.00392 -8.48469 -8.30731 -5.95207 -3.99589 3.13939 3.33360 3.39696 3.42792 3.47434 3.87477 4.48412 4.62391 4.84845 4.90902 5.15171 5.39845 5.44446 5.62116 5.63809 5.70508 5.86254 6.05009 6.11314 6.23117 6.24979 6.78741 6.90072 7.75751 7.87373 7.89206 8.08276 8.39642 8.78421 9.09259 9.64001 11.15861 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.080483 B = 0.006192 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.816141 B = 4520.930868 C = 4738.794194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.170 4.170 3 H 0.108 0.892 4 C -0.195 4.195 5 C 0.089 3.911 6 H 0.134 0.866 7 N -0.715 5.715 8 C 0.513 3.487 9 O -0.533 6.533 10 C -0.129 4.129 11 C 0.036 3.964 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.398 0.602 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 9.402 13.104 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.189 4.189 3 H 0.126 0.874 4 C -0.234 4.234 5 C -0.018 4.018 6 H 0.152 0.848 7 N -0.366 5.366 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.169 4.169 11 C -0.002 4.002 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.232 0.768 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.107 9.469 12.634 16.313 hybrid contribution -0.942 -0.731 -0.228 1.214 sum -5.049 8.738 12.405 15.992 Atomic orbital electron populations 1.21304 0.92823 1.01867 1.02150 1.22796 0.95804 0.95031 1.05288 0.87405 1.23572 1.02840 1.01341 0.95611 1.21616 0.97176 0.92355 0.90629 0.84798 1.45636 1.17216 1.40906 1.32863 1.21606 0.88291 0.81285 0.78646 1.90657 1.20150 1.65753 1.64248 1.21874 0.99155 0.95815 1.00100 1.18913 0.95026 0.95444 0.90774 1.21260 0.99911 1.21513 1.13783 0.92545 1.25027 0.95023 0.97202 0.97155 1.70010 1.15415 1.41684 1.25753 0.86532 0.80555 0.81345 0.79496 1.19758 1.21011 1.21020 0.92567 0.92094 0.91841 0.88657 0.88377 0.76795 0.90194 0.90165 0.95766 0.95782 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.19 37.15 0.34 -0.74 16 2 C -0.17 -1.70 6.41 -90.58 -0.58 -2.28 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.19 -2.02 10.11 -26.69 -0.27 -2.29 16 5 C 0.09 1.18 6.40 -67.93 -0.44 0.74 16 6 H 0.13 2.02 7.40 -51.93 -0.38 1.63 16 7 N -0.71 -10.48 5.34 -53.81 -0.29 -10.76 16 8 C 0.51 10.11 7.83 -10.98 -0.09 10.02 16 9 O -0.53 -12.84 15.55 5.56 0.09 -12.75 16 10 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 11 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 12 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H 0.06 0.45 7.61 -51.93 -0.40 0.06 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 24 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.40 4.68 7.69 -40.82 -0.31 4.37 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -33.38 261.30 -6.70 -40.07 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.43 Total: -0.04 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.72 Total: -10.28 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.45 Total: -37.67 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.38 -6.70 -40.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.353 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds