Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 115.56372 * 2 1 4 4 C 1.53075 * 117.51733 * 145.70860 * 2 1 3 5 5 C 1.52997 * 59.98449 * 107.47261 * 4 2 1 6 6 H 1.09007 * 117.49410 * 107.50267 * 5 4 2 7 7 N 1.46499 * 117.50218 * 252.49868 * 5 4 2 8 8 C 1.34784 * 119.99971 * 223.74843 * 7 5 4 9 9 O 1.21274 * 119.99897 * 359.72827 * 8 7 5 10 10 C 1.50695 * 119.99635 * 179.97438 * 8 7 5 11 11 C 1.53002 * 109.47004 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47331 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00041 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00004 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47317 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47211 * 120.00028 * 16 14 12 19 19 H 1.48507 * 109.47345 * 239.99791 * 16 14 12 20 20 H 1.09000 * 109.47111 * 205.69036 * 1 2 3 21 21 H 1.09005 * 109.47160 * 325.67961 * 1 2 3 22 22 H 1.08998 * 109.47667 * 85.68663 * 1 2 3 23 23 H 1.09001 * 117.50953 * 359.97438 * 4 2 1 24 24 H 1.09003 * 117.51807 * 214.95323 * 4 2 1 25 25 H 0.96999 * 119.99984 * 43.74690 * 7 5 4 26 26 H 1.09005 * 109.47403 * 300.00056 * 10 8 7 27 27 H 1.09002 * 109.47422 * 60.00295 * 10 8 7 28 28 H 1.08997 * 109.47244 * 300.00535 * 11 10 8 29 29 H 1.09002 * 109.46787 * 59.99910 * 11 10 8 30 30 H 0.97000 * 120.00297 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1216 0.7649 5 6 2.2363 -1.1209 -0.7651 6 1 3.1713 -0.8750 -1.2687 7 7 1.3960 -2.1121 -1.4416 8 6 1.8766 -2.7924 -2.5013 9 8 3.0029 -2.5805 -2.8978 10 6 1.0123 -3.8123 -3.1967 11 6 1.7910 -4.4341 -4.3577 12 6 0.9265 -5.4536 -5.0536 13 1 -0.0777 -5.6398 -4.7027 14 6 1.4181 -6.1495 -6.1377 15 7 2.6412 -5.9231 -6.5647 16 14 0.3463 -7.4127 -7.0007 17 1 -0.9777 -7.4786 -6.3314 18 1 0.1643 -7.0198 -8.4212 19 1 1.0003 -8.7444 -6.9353 20 1 -0.3633 -0.9261 0.4455 21 1 -0.3634 0.8488 0.5794 22 1 -0.3634 0.0773 -1.0247 23 1 1.6124 -1.8593 1.2684 24 1 3.1726 -0.8761 1.2678 25 1 0.4937 -2.2788 -1.1269 26 1 0.7296 -4.5920 -2.4894 27 1 0.1147 -3.3271 -3.5803 28 1 2.0733 -3.6542 -5.0649 29 1 2.6887 -4.9192 -3.9745 30 1 2.9869 -6.4124 -7.3276 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307962776.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -56.940739 kcal Electronic energy + Delta-G solvation = -12061.023585 eV Core-core repulsion = 9855.371959 eV Total energy + Delta-G solvation = -2205.651626 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85269 -38.58003 -35.56493 -34.06103 -32.77329 -29.37661 -27.77028 -24.28768 -22.66323 -21.46854 -20.99893 -18.88142 -17.67707 -17.00546 -16.46946 -16.43552 -15.80411 -14.95875 -14.38257 -14.22519 -13.93921 -13.47232 -13.23808 -13.17826 -12.84698 -12.44091 -12.33858 -12.03803 -11.93195 -11.64792 -11.28683 -11.01819 -10.71607 -10.57719 -9.64752 -8.18024 -6.32275 1.42810 1.44384 1.57726 1.64007 2.17762 2.44666 2.92932 3.15189 3.72276 3.96037 3.99707 4.07841 4.42851 4.48554 4.55054 4.77622 4.92339 4.92836 4.97984 5.11044 5.20682 5.39857 5.48535 5.58916 5.62465 5.85431 6.17387 6.59031 6.86480 7.33583 7.38358 8.95106 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.080483 B = 0.006192 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 347.816141 B = 4520.930868 C = 4738.794194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 H 0.120 0.880 4 C -0.176 4.176 5 C 0.045 3.955 6 H 0.106 0.894 7 N -0.689 5.689 8 C 0.513 3.487 9 O -0.590 6.590 10 C -0.118 4.118 11 C 0.040 3.960 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.008 4.008 15 N -0.939 5.939 16 Si 0.976 3.024 17 H -0.252 1.252 18 H -0.280 1.280 19 H -0.280 1.280 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.415 0.585 26 H 0.106 0.894 27 H 0.106 0.894 28 H -0.018 1.018 29 H -0.018 1.018 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.666 9.415 14.685 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 H 0.138 0.862 4 C -0.215 4.215 5 C -0.061 4.061 6 H 0.124 0.876 7 N -0.340 5.340 8 C 0.302 3.698 9 O -0.470 6.470 10 C -0.158 4.158 11 C 0.003 3.997 12 C -0.580 4.580 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.799 3.201 17 H -0.175 1.175 18 H -0.206 1.206 19 H -0.206 1.206 20 H 0.084 0.916 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.128 0.872 25 H 0.253 0.747 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.001 0.999 29 H 0.000 1.000 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.766 9.511 14.281 18.444 hybrid contribution -0.105 -0.657 -0.649 0.929 sum -6.871 8.855 13.632 17.648 Atomic orbital electron populations 1.21376 0.91424 1.03296 1.02296 1.22926 0.96812 0.94734 1.02028 0.86183 1.23661 1.03644 1.01381 0.92798 1.21712 0.97240 0.94695 0.92475 0.87575 1.45257 1.17944 1.39773 1.31027 1.21390 0.87324 0.81494 0.79635 1.90640 1.22432 1.67672 1.66275 1.21640 0.98896 0.96828 0.98421 1.18708 0.94428 0.94273 0.92312 1.21746 1.00774 1.21503 1.13968 0.90492 1.26156 0.96439 0.99747 0.98167 1.70189 1.17881 1.43291 1.26559 0.85246 0.79048 0.77771 0.77992 1.17540 1.20621 1.20633 0.91588 0.90251 0.92390 0.87454 0.87246 0.74699 0.87622 0.87602 0.99950 0.99969 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.15 -2.53 6.41 -10.77 -0.07 -2.60 16 3 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 4 C -0.18 -3.20 10.11 30.62 0.31 -2.89 16 5 C 0.04 1.15 6.40 44.99 0.29 1.44 16 6 H 0.11 3.34 7.40 -2.38 -0.02 3.32 16 7 N -0.69 -19.42 5.34 -442.53 -2.36 -21.78 16 8 C 0.51 20.49 7.83 87.65 0.69 21.18 16 9 O -0.59 -30.03 15.55 -3.01 -0.05 -30.08 16 10 C -0.12 -4.81 5.64 29.85 0.17 -4.64 16 11 C 0.04 2.29 4.26 29.85 0.13 2.42 16 12 C -0.54 -31.12 9.11 25.60 0.23 -30.88 16 13 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 14 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 15 N -0.94 -60.20 13.29 21.45 0.28 -59.92 16 16 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 17 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H 0.07 0.80 7.61 -2.39 -0.02 0.78 16 21 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.11 1.73 8.05 -2.39 -0.02 1.71 16 24 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.42 8.68 7.69 -92.71 -0.71 7.97 16 26 H 0.11 3.75 8.14 -2.38 -0.02 3.73 16 27 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 28 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 29 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 30 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -75.93 261.30 3.17 -72.76 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.40 Total: 9.55 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 2.87 Total: -17.07 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.08 Total: -81.70 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -0.05 Total: -30.08 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -75.93 3.17 -72.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962776.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.822 kcal (2) G-P(sol) polarization free energy of solvation -75.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds