Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.55176 * 2 1 4 4 C 1.52997 * 117.51975 * 214.29838 * 2 1 3 5 5 C 1.52994 * 60.00010 * 252.52151 * 4 2 1 6 6 H 1.09007 * 117.51435 * 252.51232 * 5 4 2 7 7 N 1.46501 * 117.49886 * 107.49197 * 5 4 2 8 8 C 1.34779 * 119.99833 * 136.37740 * 7 5 4 9 9 O 1.21279 * 120.00410 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99541 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.46653 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46973 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 H 1.08999 * 109.47488 * 274.33394 * 1 2 3 21 21 H 1.09007 * 109.46908 * 34.32889 * 1 2 3 22 22 H 1.09000 * 109.47208 * 154.32853 * 1 2 3 23 23 H 1.09001 * 117.50587 * 145.02757 * 4 2 1 24 24 H 1.09004 * 117.49446 * 0.02562 * 4 2 1 25 25 H 0.96996 * 119.99883 * 316.36635 * 7 5 4 26 26 H 1.08996 * 109.47057 * 60.00260 * 10 8 7 27 27 H 1.08996 * 109.47084 * 299.99297 * 10 8 7 28 28 H 1.08994 * 109.48028 * 59.99997 * 11 10 8 29 29 H 1.09000 * 109.47206 * 299.99851 * 11 10 8 30 30 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 3.1711 -0.8746 1.2692 7 7 1.3960 -2.1120 1.4416 8 6 1.8758 -2.7909 2.5025 9 8 3.0034 -2.5815 2.8971 10 6 1.0111 -3.8102 3.1985 11 6 1.7891 -4.4303 4.3609 12 6 0.9242 -5.4493 5.0573 13 1 -0.0796 -5.6361 4.7057 14 6 1.4150 -6.1436 6.1427 15 7 0.6604 -7.0332 6.7501 16 14 3.1516 -5.8209 6.7504 17 1 4.0966 -6.7315 6.0551 18 1 3.2170 -6.0634 8.2140 19 1 3.5220 -4.4114 6.4651 20 1 -0.3634 0.0777 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3633 -0.9262 -0.4452 23 1 3.1721 -0.8751 -1.2677 24 1 1.6119 -1.8584 -1.2682 25 1 0.4943 -2.2797 1.1260 26 1 0.7294 -4.5908 2.4919 27 1 0.1133 -3.3247 3.5808 28 1 2.0706 -3.6496 5.0674 29 1 2.6872 -4.9157 3.9791 30 1 1.0056 -7.5214 7.5139 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307962777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -30.970415 kcal Electronic energy + Delta-G solvation = -12110.490400 eV Core-core repulsion = 9905.964932 eV Total energy + Delta-G solvation = -2204.525468 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.57211 -37.50687 -33.47241 -32.75861 -31.15784 -28.65412 -26.18679 -22.47494 -21.42129 -20.10742 -19.77623 -17.31375 -16.27176 -15.82077 -14.96447 -14.92699 -14.05717 -13.46368 -13.35955 -12.85531 -12.56178 -12.51799 -12.33150 -11.63621 -11.41340 -11.09114 -10.90833 -10.23814 -10.09615 -10.03343 -9.77717 -9.25607 -9.16425 -8.58180 -8.49309 -6.02350 -4.01109 3.00630 3.35360 3.38847 3.45361 3.56462 3.80175 4.51823 4.56192 4.77826 4.84471 5.10178 5.30986 5.33239 5.57747 5.58129 5.64896 5.81481 5.94590 6.06078 6.08772 6.09725 6.67623 6.69529 7.37226 7.44207 7.75531 7.80505 8.50633 8.64921 9.00670 9.60760 11.10514 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071912 B = 0.006824 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.270289 B = 4102.134761 C = 4355.086041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.168 4.168 3 H 0.108 0.892 4 C -0.194 4.194 5 C 0.087 3.913 6 H 0.134 0.866 7 N -0.712 5.712 8 C 0.513 3.487 9 O -0.539 6.539 10 C -0.122 4.122 11 C 0.001 3.999 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.261 1.261 20 H 0.063 0.937 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.399 0.601 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.024 0.976 29 H 0.019 0.981 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 12.449 -13.827 18.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 H 0.126 0.874 4 C -0.233 4.233 5 C -0.019 4.019 6 H 0.152 0.848 7 N -0.364 5.364 8 C 0.302 3.698 9 O -0.415 6.415 10 C -0.162 4.162 11 C -0.037 4.037 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 H 0.082 0.918 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.117 0.883 24 H 0.114 0.886 25 H 0.234 0.766 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.688 12.443 -13.348 18.261 hybrid contribution 0.411 0.008 0.092 0.421 sum 1.099 12.451 -13.255 18.219 Atomic orbital electron populations 1.21314 0.92739 1.01956 1.02204 1.22790 0.95872 0.95023 1.05114 0.87373 1.23565 1.02886 1.01365 0.95449 1.21624 0.97164 0.92438 0.90724 0.84798 1.45588 1.17388 1.40813 1.32576 1.21580 0.88211 0.81239 0.78733 1.90641 1.20167 1.66052 1.64633 1.21676 0.99034 0.95983 0.99476 1.19375 0.95674 0.96138 0.92490 1.21115 1.01355 1.20343 1.13488 0.90927 1.24969 0.97562 0.94531 0.96160 1.69912 1.36885 1.25495 1.21991 0.86795 0.85204 0.79891 0.77661 1.20230 1.21434 1.18526 0.91810 0.92025 0.92511 0.88343 0.88579 0.76595 0.89555 0.89515 0.95779 0.96236 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.17 -1.59 6.41 -90.62 -0.58 -2.17 16 3 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.19 -1.90 10.10 -26.74 -0.27 -2.17 16 5 C 0.09 1.09 6.41 -67.93 -0.44 0.65 16 6 H 0.13 1.90 7.40 -51.93 -0.38 1.51 16 7 N -0.71 -9.87 5.34 -53.81 -0.29 -10.16 16 8 C 0.51 9.52 7.83 -10.98 -0.09 9.44 16 9 O -0.54 -12.14 15.55 5.56 0.09 -12.06 16 10 C -0.12 -2.38 5.64 -27.88 -0.16 -2.54 16 11 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 12 C -0.53 -15.13 9.66 -34.44 -0.33 -15.46 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 16 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 19 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 22 H 0.06 0.44 7.61 -51.93 -0.40 0.04 16 23 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 25 H 0.40 4.44 7.69 -40.82 -0.31 4.12 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 28 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 29 H 0.02 0.51 7.53 -51.93 -0.39 0.11 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 257.69 15.07 3.88 3.88 Total: -1.00 -33.32 257.69 -6.32 -39.64 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.40 Total: -0.96 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.71 Total: -11.04 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.49 Total: -37.55 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.32 -6.32 -39.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.672 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds