Wall clock time and date at job start Mon Mar 30 2020 02:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 115.55176 * 2 1 4 4 C 1.52997 * 117.51975 * 214.29838 * 2 1 3 5 5 C 1.52994 * 60.00010 * 252.52151 * 4 2 1 6 6 H 1.09007 * 117.51435 * 252.51232 * 5 4 2 7 7 N 1.46501 * 117.49886 * 107.49197 * 5 4 2 8 8 C 1.34779 * 119.99833 * 136.37740 * 7 5 4 9 9 O 1.21279 * 120.00410 * 359.97438 * 8 7 5 10 10 C 1.50703 * 119.99541 * 179.97438 * 8 7 5 11 11 C 1.53000 * 109.46653 * 180.02562 * 10 8 7 12 12 C 1.50708 * 109.46973 * 179.97438 * 11 10 8 13 13 H 1.07991 * 119.99789 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00008 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00089 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 H 1.08999 * 109.47488 * 274.33394 * 1 2 3 21 21 H 1.09007 * 109.46908 * 34.32889 * 1 2 3 22 22 H 1.09000 * 109.47208 * 154.32853 * 1 2 3 23 23 H 1.09001 * 117.50587 * 145.02757 * 4 2 1 24 24 H 1.09004 * 117.49446 * 0.02562 * 4 2 1 25 25 H 0.96996 * 119.99883 * 316.36635 * 7 5 4 26 26 H 1.08996 * 109.47057 * 60.00260 * 10 8 7 27 27 H 1.08996 * 109.47084 * 299.99297 * 10 8 7 28 28 H 1.08994 * 109.48028 * 59.99997 * 11 10 8 29 29 H 1.09000 * 109.47206 * 299.99851 * 11 10 8 30 30 H 0.96997 * 119.99848 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 3.1711 -0.8746 1.2692 7 7 1.3960 -2.1120 1.4416 8 6 1.8758 -2.7909 2.5025 9 8 3.0034 -2.5815 2.8971 10 6 1.0111 -3.8102 3.1985 11 6 1.7891 -4.4303 4.3609 12 6 0.9242 -5.4493 5.0573 13 1 -0.0796 -5.6361 4.7057 14 6 1.4150 -6.1436 6.1427 15 7 0.6604 -7.0332 6.7501 16 14 3.1516 -5.8209 6.7504 17 1 4.0966 -6.7315 6.0551 18 1 3.2170 -6.0634 8.2140 19 1 3.5220 -4.4114 6.4651 20 1 -0.3634 0.0777 1.0247 21 1 -0.3633 0.8487 -0.5796 22 1 -0.3633 -0.9262 -0.4452 23 1 3.1721 -0.8751 -1.2677 24 1 1.6119 -1.8584 -1.2682 25 1 0.4943 -2.2797 1.1260 26 1 0.7294 -4.5908 2.4919 27 1 0.1133 -3.3247 3.5808 28 1 2.0706 -3.6496 5.0674 29 1 2.6872 -4.9157 3.9791 30 1 1.0056 -7.5214 7.5139 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307962777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:16 Heat of formation + Delta-G solvation = -54.034149 kcal Electronic energy + Delta-G solvation = -12111.490518 eV Core-core repulsion = 9905.964932 eV Total energy + Delta-G solvation = -2205.525587 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.87647 -38.59632 -35.54841 -34.08010 -33.11366 -29.41015 -28.06173 -23.96307 -22.58986 -21.43268 -21.00237 -19.25306 -17.82551 -16.99065 -16.49711 -16.32502 -15.77326 -15.01736 -14.64776 -14.49557 -13.96788 -13.48181 -13.41078 -13.20318 -12.91810 -12.34043 -12.12653 -12.03911 -11.97083 -11.77589 -11.40726 -11.02280 -10.78429 -10.75218 -9.65851 -8.31962 -6.34893 1.33017 1.34915 1.50144 1.60930 2.16811 2.34843 2.92978 3.03810 3.72356 3.93016 3.97400 4.06398 4.37469 4.42705 4.48514 4.76172 4.92041 4.92520 4.95977 5.04821 5.20417 5.32844 5.39546 5.43662 5.57259 5.60893 6.22988 6.56115 6.71502 7.29133 7.30727 8.83757 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071912 B = 0.006824 C = 0.006428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.270289 B = 4102.134761 C = 4355.086041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 H 0.121 0.879 4 C -0.177 4.177 5 C 0.048 3.952 6 H 0.111 0.889 7 N -0.690 5.690 8 C 0.516 3.484 9 O -0.587 6.587 10 C -0.116 4.116 11 C 0.004 3.996 12 C -0.530 4.530 13 H 0.051 0.949 14 C 0.014 3.986 15 N -0.943 5.943 16 Si 0.938 3.062 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.262 1.262 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.415 0.585 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.010 0.990 29 H 0.008 0.992 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.123 13.685 -15.419 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 H 0.139 0.861 4 C -0.216 4.216 5 C -0.058 4.058 6 H 0.129 0.871 7 N -0.341 5.341 8 C 0.305 3.695 9 O -0.467 6.467 10 C -0.156 4.156 11 C -0.034 4.034 12 C -0.568 4.568 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.584 5.584 16 Si 0.762 3.238 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.187 1.187 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.252 0.748 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.028 0.972 29 H 0.027 0.973 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.656 13.701 -14.990 20.319 hybrid contribution 0.325 -0.342 0.506 0.692 sum 0.981 13.359 -14.484 19.728 Atomic orbital electron populations 1.21379 0.91610 1.03214 1.02278 1.22908 0.96689 0.94834 1.02220 0.86138 1.23648 1.03650 1.01350 0.92909 1.21729 0.97236 0.94478 0.92399 0.87092 1.45271 1.18074 1.39808 1.30926 1.21237 0.87276 0.81344 0.79631 1.90625 1.21971 1.67709 1.66374 1.21500 0.98918 0.96948 0.98200 1.19229 0.95284 0.94888 0.93964 1.21431 1.00957 1.20829 1.13539 0.93060 1.25791 1.01447 0.94475 0.96618 1.70020 1.38809 1.26726 1.22850 0.85837 0.80614 0.79622 0.77689 1.19343 1.20260 1.18677 0.92387 0.90356 0.91707 0.87164 0.87614 0.74761 0.87806 0.87818 0.97189 0.97321 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.19 71.98 0.66 -1.02 16 2 C -0.15 -2.35 6.41 -10.80 -0.07 -2.42 16 3 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.18 -2.94 10.10 30.59 0.31 -2.63 16 5 C 0.05 1.11 6.41 44.99 0.29 1.40 16 6 H 0.11 3.14 7.40 -2.38 -0.02 3.13 16 7 N -0.69 -17.94 5.34 -442.54 -2.36 -20.30 16 8 C 0.52 18.75 7.83 87.66 0.69 19.44 16 9 O -0.59 -26.58 15.55 -3.02 -0.05 -26.63 16 10 C -0.12 -4.42 5.64 29.85 0.17 -4.25 16 11 C 0.00 0.22 3.33 29.85 0.10 0.32 16 12 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 13 H 0.05 3.12 7.99 -2.92 -0.02 3.10 16 14 C 0.01 0.86 5.47 84.65 0.46 1.32 16 15 N -0.94 -59.35 13.96 21.45 0.30 -59.05 16 16 Si 0.94 47.15 27.47 68.60 1.88 49.03 16 17 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 19 H -0.26 -13.16 6.54 99.48 0.65 -12.51 16 20 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 22 H 0.06 0.76 7.61 -2.39 -0.02 0.74 16 23 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.11 1.59 8.05 -2.38 -0.02 1.57 16 25 H 0.41 8.14 7.69 -92.71 -0.71 7.42 16 26 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 28 H 0.01 0.52 7.16 -2.39 -0.02 0.50 16 29 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 30 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -71.99 257.69 2.98 -69.02 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.35 Total: 6.31 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 2.85 Total: -18.38 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -2.06 Total: -79.35 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.63 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.88 Total: 49.03 kcal Total: -71.99 2.98 -69.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.982 kcal (2) G-P(sol) polarization free energy of solvation -71.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds