Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 115.56573 * 2 1 4 4 C 1.53078 * 117.49076 * 145.70327 * 2 1 3 5 5 C 1.52997 * 117.50081 * 214.30320 * 2 1 3 6 6 H 1.08998 * 117.49802 * 0.02562 * 5 2 1 7 7 N 1.46493 * 117.50203 * 145.02490 * 5 2 1 8 8 C 1.34770 * 120.00392 * 204.91740 * 7 5 2 9 9 O 1.21283 * 120.00059 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00483 * 179.97438 * 8 7 5 11 11 C 1.52996 * 109.47491 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.08998 * 109.47191 * 205.69458 * 1 2 3 21 21 H 1.08997 * 109.46874 * 325.69740 * 1 2 3 22 22 H 1.09003 * 109.46504 * 85.69242 * 1 2 3 23 23 H 1.09001 * 117.49261 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.51310 * 214.96807 * 4 2 1 25 25 H 0.97000 * 120.00041 * 24.91069 * 7 5 2 26 26 H 1.09004 * 109.46801 * 59.99704 * 10 8 7 27 27 H 1.09000 * 109.47461 * 300.00236 * 10 8 7 28 28 H 1.09004 * 109.47066 * 60.00201 * 11 10 8 29 29 H 1.08994 * 109.47405 * 300.00031 * 11 10 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1218 0.7652 5 6 2.2365 -1.1210 -0.7648 6 1 1.6113 -1.8584 -1.2684 7 7 3.4933 -0.7908 -1.4412 8 6 3.8997 -1.5179 -2.5006 9 8 3.2252 -2.4460 -2.8938 10 6 5.1923 -1.1779 -3.1968 11 6 5.4180 -2.1498 -4.3566 12 6 6.7103 -1.8093 -5.0531 13 1 7.3108 -0.9826 -4.7033 14 6 7.1291 -2.5570 -6.1332 15 7 6.3981 -3.5639 -6.5590 16 14 8.7348 -2.1397 -6.9917 17 1 9.8461 -2.8921 -6.3561 18 1 8.6409 -2.5133 -8.4259 19 1 8.9939 -0.6821 -6.8759 20 1 -0.3633 -0.9260 0.4456 21 1 -0.3633 0.8489 0.5791 22 1 -0.3632 0.0772 -1.0248 23 1 1.6112 -1.8596 1.2678 24 1 3.1719 -0.8765 1.2685 25 1 4.0330 -0.0487 -1.1266 26 1 6.0179 -1.2585 -2.4897 27 1 5.1411 -0.1590 -3.5808 28 1 4.5924 -2.0695 -5.0638 29 1 5.4694 -3.1684 -3.9723 30 1 6.6926 -4.0898 -7.3191 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307962778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -34.247004 kcal Electronic energy + Delta-G solvation = -11956.665601 eV Core-core repulsion = 9751.998049 eV Total energy + Delta-G solvation = -2204.667552 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.39271 -37.37574 -33.43747 -32.88399 -30.85872 -28.34114 -25.73302 -22.59740 -21.15760 -20.76869 -19.57623 -16.87717 -16.41252 -15.65732 -14.79618 -14.45253 -13.94922 -13.81415 -13.25013 -12.86513 -12.46906 -12.16475 -12.03134 -11.61114 -11.15226 -10.98852 -10.87394 -10.59876 -10.16754 -9.94688 -9.65651 -9.17519 -9.00674 -8.48239 -8.30294 -5.94973 -3.99405 3.13649 3.34282 3.39182 3.41758 3.45566 3.86841 4.48463 4.70157 4.78498 4.93824 5.16265 5.39976 5.41624 5.62917 5.66087 5.68466 5.87218 6.03505 6.14102 6.23153 6.25027 6.78194 6.90096 7.75503 7.87439 7.88712 8.08385 8.39705 8.77983 9.09167 9.64067 11.16042 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.097353 B = 0.005778 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.543901 B = 4845.010920 C = 4964.833667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.169 4.169 3 H 0.104 0.896 4 C -0.194 4.194 5 C 0.089 3.911 6 H 0.134 0.866 7 N -0.716 5.716 8 C 0.513 3.487 9 O -0.533 6.533 10 C -0.129 4.129 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.398 0.602 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.323 7.968 13.095 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.188 4.188 3 H 0.122 0.878 4 C -0.233 4.233 5 C -0.018 4.018 6 H 0.152 0.848 7 N -0.368 5.368 8 C 0.302 3.698 9 O -0.408 6.408 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.113 0.887 25 H 0.232 0.768 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.803 7.125 12.620 16.459 hybrid contribution 1.173 0.596 -0.219 1.334 sum -6.630 7.721 12.401 16.042 Atomic orbital electron populations 1.21335 0.92460 1.01906 1.02092 1.22800 0.95769 0.95002 1.05266 0.87805 1.23610 1.02592 1.01470 0.95598 1.21665 0.88922 1.00536 0.90636 0.84797 1.45665 1.22768 1.35414 1.32909 1.21610 0.88274 0.81300 0.78636 1.90660 1.56563 1.29232 1.64351 1.21875 0.91832 1.03129 1.00104 1.18908 0.96769 0.93675 0.90779 1.21226 1.06272 1.15020 1.14049 0.92597 1.25027 0.97164 0.95060 0.97128 1.70003 1.37842 1.19028 1.25973 0.86583 0.83856 0.78619 0.78834 1.20677 1.21218 1.19891 0.92381 0.92199 0.91990 0.88294 0.88707 0.76813 0.90175 0.90152 0.95776 0.95780 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.19 37.16 0.38 -0.68 16 2 C -0.17 -1.70 6.33 -90.58 -0.57 -2.28 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.19 -2.02 10.11 -26.69 -0.27 -2.29 16 5 C 0.09 1.19 6.15 -67.94 -0.42 0.77 16 6 H 0.13 2.05 7.40 -51.93 -0.38 1.66 16 7 N -0.72 -10.52 5.57 -53.82 -0.30 -10.82 16 8 C 0.51 10.13 7.83 -10.99 -0.09 10.05 16 9 O -0.53 -12.88 15.55 5.55 0.09 -12.79 16 10 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 11 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 12 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.40 4.58 8.83 -40.82 -0.36 4.22 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -33.45 263.61 -6.67 -40.12 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.49 Total: -0.14 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.66 Total: -10.19 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.44 Total: -37.73 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.45 -6.67 -40.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.876 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds