Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 115.56573 * 2 1 4 4 C 1.53078 * 117.49076 * 145.70327 * 2 1 3 5 5 C 1.52997 * 117.50081 * 214.30320 * 2 1 3 6 6 H 1.08998 * 117.49802 * 0.02562 * 5 2 1 7 7 N 1.46493 * 117.50203 * 145.02490 * 5 2 1 8 8 C 1.34770 * 120.00392 * 204.91740 * 7 5 2 9 9 O 1.21283 * 120.00059 * 359.97438 * 8 7 5 10 10 C 1.50697 * 120.00483 * 179.97438 * 8 7 5 11 11 C 1.52996 * 109.47491 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 H 1.08998 * 109.47191 * 205.69458 * 1 2 3 21 21 H 1.08997 * 109.46874 * 325.69740 * 1 2 3 22 22 H 1.09003 * 109.46504 * 85.69242 * 1 2 3 23 23 H 1.09001 * 117.49261 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.51310 * 214.96807 * 4 2 1 25 25 H 0.97000 * 120.00041 * 24.91069 * 7 5 2 26 26 H 1.09004 * 109.46801 * 59.99704 * 10 8 7 27 27 H 1.09000 * 109.47461 * 300.00236 * 10 8 7 28 28 H 1.09004 * 109.47066 * 60.00201 * 11 10 8 29 29 H 1.08994 * 109.47405 * 300.00031 * 11 10 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1218 0.7652 5 6 2.2365 -1.1210 -0.7648 6 1 1.6113 -1.8584 -1.2684 7 7 3.4933 -0.7908 -1.4412 8 6 3.8997 -1.5179 -2.5006 9 8 3.2252 -2.4460 -2.8938 10 6 5.1923 -1.1779 -3.1968 11 6 5.4180 -2.1498 -4.3566 12 6 6.7103 -1.8093 -5.0531 13 1 7.3108 -0.9826 -4.7033 14 6 7.1291 -2.5570 -6.1332 15 7 6.3981 -3.5639 -6.5590 16 14 8.7348 -2.1397 -6.9917 17 1 9.8461 -2.8921 -6.3561 18 1 8.6409 -2.5133 -8.4259 19 1 8.9939 -0.6821 -6.8759 20 1 -0.3633 -0.9260 0.4456 21 1 -0.3633 0.8489 0.5791 22 1 -0.3632 0.0772 -1.0248 23 1 1.6112 -1.8596 1.2678 24 1 3.1719 -0.8765 1.2685 25 1 4.0330 -0.0487 -1.1266 26 1 6.0179 -1.2585 -2.4897 27 1 5.1411 -0.1590 -3.5808 28 1 4.5924 -2.0695 -5.0638 29 1 5.4694 -3.1684 -3.9723 30 1 6.6926 -4.0898 -7.3191 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307962778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = -57.732925 kcal Electronic energy + Delta-G solvation = -11957.684027 eV Core-core repulsion = 9751.998049 eV Total energy + Delta-G solvation = -2205.685978 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81491 -38.53430 -35.56395 -34.25345 -32.82768 -29.23450 -27.68215 -24.25858 -22.50433 -21.76470 -21.06824 -18.82063 -17.60228 -17.41043 -16.47156 -16.43001 -15.13849 -14.94057 -14.42229 -14.31235 -14.11389 -13.69379 -13.24268 -12.92636 -12.81273 -12.47275 -12.44649 -12.00717 -11.92332 -11.64966 -11.30844 -11.12282 -10.69666 -10.56680 -9.64089 -8.17874 -6.32230 1.42728 1.45689 1.56660 1.63671 2.16338 2.44660 2.92004 3.15217 3.75688 3.92207 4.01585 4.06838 4.42418 4.48309 4.55174 4.75004 4.91425 4.93219 4.97411 5.11652 5.17791 5.38930 5.48454 5.59375 5.62402 5.85301 6.17319 6.59704 6.86251 7.33726 7.38335 8.95014 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.097353 B = 0.005778 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 287.543901 B = 4845.010920 C = 4964.833667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 H 0.122 0.878 4 C -0.175 4.175 5 C 0.045 3.955 6 H 0.105 0.895 7 N -0.691 5.691 8 C 0.512 3.488 9 O -0.591 6.591 10 C -0.118 4.118 11 C 0.041 3.959 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.007 4.007 15 N -0.939 5.939 16 Si 0.976 3.024 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.255 1.255 20 H 0.060 0.940 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.417 0.583 26 H 0.106 0.894 27 H 0.106 0.894 28 H -0.018 1.018 29 H -0.018 1.018 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 10.320 14.692 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 H 0.140 0.860 4 C -0.214 4.214 5 C -0.061 4.061 6 H 0.123 0.877 7 N -0.342 5.342 8 C 0.301 3.699 9 O -0.471 6.471 10 C -0.158 4.158 11 C 0.003 3.997 12 C -0.582 4.582 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.178 1.178 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.072 0.928 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.255 0.745 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.735 9.541 14.284 18.450 hybrid contribution 0.756 -0.130 -0.645 1.002 sum -5.979 9.411 13.638 17.616 Atomic orbital electron populations 1.21402 0.91545 1.03070 1.02090 1.22919 0.96454 0.94903 1.02033 0.86049 1.23699 1.03352 1.01525 0.92777 1.21758 0.88718 1.03100 0.92479 0.87728 1.45296 1.23230 1.34609 1.31046 1.21398 0.87732 0.81086 0.79643 1.90643 1.58078 1.31957 1.66401 1.21639 0.93414 1.02282 0.98422 1.18704 0.95308 0.93380 0.92321 1.21722 1.06709 1.15490 1.14237 0.90495 1.26157 1.01500 0.94689 0.98117 1.70187 1.40381 1.20554 1.26752 0.85293 0.78360 0.79344 0.77069 1.19681 1.21189 1.17844 0.92065 0.90094 0.92762 0.87334 0.87288 0.74528 0.87580 0.87587 0.99979 0.99980 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 10.19 71.98 0.73 -1.15 16 2 C -0.14 -2.50 6.33 -10.77 -0.07 -2.57 16 3 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.18 -3.17 10.11 30.62 0.31 -2.86 16 5 C 0.05 1.17 6.15 44.99 0.28 1.45 16 6 H 0.10 3.34 7.40 -2.39 -0.02 3.32 16 7 N -0.69 -19.41 5.57 -442.57 -2.46 -21.87 16 8 C 0.51 20.51 7.83 87.66 0.69 21.19 16 9 O -0.59 -30.14 15.55 -3.04 -0.05 -30.19 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.04 2.30 4.26 29.85 0.13 2.43 16 12 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 13 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 14 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 15 N -0.94 -60.21 13.29 21.45 0.28 -59.92 16 16 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 20 H 0.06 0.89 7.90 -2.39 -0.02 0.88 16 21 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.11 1.78 8.05 -2.39 -0.02 1.76 16 24 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.42 8.40 8.83 -92.71 -0.82 7.59 16 26 H 0.11 3.76 8.14 -2.38 -0.02 3.74 16 27 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 28 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 29 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 30 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -76.24 263.61 3.03 -73.22 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.30 Total: 9.37 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 2.93 Total: -17.13 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.18 Total: -81.80 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.24 3.03 -73.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307962778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.483 kcal (2) G-P(sol) polarization free energy of solvation -76.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds