Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48499 * 109.47425 * 240.00310 * 3 2 1 5 5 H 1.48505 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47273 * 119.99814 * 3 2 1 7 7 C 1.37872 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47436 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47190 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.37479 * 119.99950 * 179.97438 * 12 11 10 14 14 N 1.29317 * 122.86802 * 359.97438 * 13 12 11 15 15 C 1.46945 * 110.08873 * 179.97438 * 14 13 12 16 16 C 1.54169 * 104.00939 * 359.97438 * 15 14 13 17 17 N 1.37146 * 122.82063 * 179.87148 * 13 12 11 18 18 H 0.96999 * 119.99595 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47100 * 59.99991 * 9 7 2 20 20 H 1.09007 * 109.47255 * 300.00361 * 9 7 2 21 21 H 1.09001 * 109.47214 * 59.99778 * 10 9 7 22 22 H 1.09001 * 109.46855 * 299.99811 * 10 9 7 23 23 H 1.08995 * 109.46964 * 60.00073 * 11 10 9 24 24 H 1.09001 * 109.47015 * 299.99649 * 11 10 9 25 25 H 0.97002 * 120.00215 * 359.97438 * 12 11 10 26 26 H 1.09003 * 110.52391 * 241.36653 * 15 14 13 27 27 H 1.08997 * 110.52312 * 118.63013 * 15 14 13 28 28 H 1.09002 * 110.66065 * 118.44578 * 16 15 14 29 29 H 1.08998 * 110.66049 * 241.39455 * 16 15 14 30 30 H 0.97003 * 126.00893 * 0.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9741 -7.3967 -0.0004 14 7 0.7161 -7.6964 -0.0004 15 6 0.5449 -9.1558 -0.0009 16 6 1.9870 -9.7008 -0.0020 17 7 2.8129 -8.4818 -0.0025 18 1 -0.4849 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8719 -3.6043 -0.8906 23 1 0.8540 -5.0445 -0.8914 24 1 0.8534 -5.0451 0.8886 25 1 3.3860 -5.9233 -0.0002 26 1 0.0144 -9.4781 -0.8969 27 1 0.0147 -9.4787 0.8950 28 1 2.1756 -10.2916 0.8945 29 1 2.1737 -10.2931 -0.8977 30 1 3.7825 -8.4530 -0.0038 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308188995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = 23.433893 kcal Electronic energy + Delta-G solvation = -11914.340913 eV Core-core repulsion = 9744.467344 eV Total energy + Delta-G solvation = -2169.873569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.74217 -35.94720 -33.40939 -31.41734 -31.25643 -28.45875 -26.11159 -23.05081 -22.32059 -20.29136 -19.69399 -17.90583 -16.33414 -15.82406 -15.01126 -14.54001 -14.51812 -14.09649 -13.21746 -12.56272 -12.35067 -12.20970 -12.12219 -11.70649 -11.27070 -10.80907 -10.64404 -10.56898 -9.76996 -9.46250 -9.40968 -9.09173 -8.54767 -8.33022 -7.57171 -5.97921 -4.00877 2.99125 3.15259 3.34495 3.39124 3.41181 4.15981 4.47454 4.68185 5.08120 5.27895 5.37656 5.67726 5.72237 5.84144 5.92300 5.98243 6.28811 6.39085 6.71955 6.76177 7.01934 7.23354 7.31042 7.68511 7.82528 8.01514 8.19768 8.42735 8.62768 9.05682 9.62946 11.13355 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.107831 B = 0.005370 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.602981 B = 5212.698462 C = 5435.803561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.144 3.856 12 N -0.722 5.722 13 C 0.598 3.402 14 N -0.636 5.636 15 C 0.045 3.955 16 C 0.090 3.910 17 N -0.776 5.776 18 H 0.261 0.739 19 H 0.019 0.981 20 H 0.019 0.981 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.400 0.600 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -16.049 -0.005 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.160 4.160 11 C 0.021 3.979 12 N -0.363 5.363 13 C 0.234 3.766 14 N -0.380 5.380 15 C -0.086 4.086 16 C -0.037 4.037 17 N -0.425 5.425 18 H 0.071 0.929 19 H 0.038 0.962 20 H 0.038 0.962 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.234 0.766 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.611 -15.547 -0.005 16.216 hybrid contribution 1.983 0.372 0.000 2.018 sum 6.594 -15.175 -0.005 16.546 Atomic orbital electron populations 1.69963 1.06034 1.26739 1.50550 1.25022 0.94848 0.99231 0.95320 0.86651 0.79561 0.83169 0.78547 1.20282 1.21274 1.20287 1.21179 0.92932 0.91021 1.50950 0.92771 1.19013 0.93841 0.90725 0.97699 1.21899 0.99822 0.93614 1.00648 1.21479 0.90974 0.83635 1.01815 1.43982 1.09302 1.00983 1.81985 1.19793 0.86832 0.81997 0.88013 1.74583 1.11223 1.10778 1.41423 1.22768 0.94040 0.90133 1.01687 1.22426 0.93099 0.87110 1.01065 1.45893 1.07966 1.04421 1.84212 0.92901 0.96221 0.96230 0.92927 0.92936 0.92090 0.92095 0.76584 0.90999 0.90991 0.91623 0.91597 0.75599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 10 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 11 C 0.14 2.63 5.82 -4.04 -0.02 2.60 16 12 N -0.72 -10.94 5.67 -62.12 -0.35 -11.29 16 13 C 0.60 9.13 8.63 -321.82 -2.78 6.36 16 14 N -0.64 -10.89 11.02 -61.18 -0.67 -11.56 16 15 C 0.05 0.58 8.04 -3.19 -0.03 0.55 16 16 C 0.09 0.90 8.10 -3.02 -0.02 0.87 16 17 N -0.78 -8.81 6.58 -60.99 -0.40 -9.22 16 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 19 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 20 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.40 5.03 8.59 -40.82 -0.35 4.68 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.41 3.51 8.96 -40.82 -0.37 3.15 16 LS Contribution 257.84 15.07 3.89 3.89 Total: -1.00 -32.03 257.84 -9.85 -41.88 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.49 Total: 1.22 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.54 Total: -5.23 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.69 Total: -58.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.03 -9.85 -41.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308188995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.313 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds