Wall clock time and date at job start Mon Mar 30 2020 02:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48499 * 109.47425 * 240.00310 * 3 2 1 5 5 H 1.48505 * 109.47066 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47273 * 119.99814 * 3 2 1 7 7 C 1.37872 * 119.99885 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99746 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47436 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47190 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.37479 * 119.99950 * 179.97438 * 12 11 10 14 14 N 1.29317 * 122.86802 * 359.97438 * 13 12 11 15 15 C 1.46945 * 110.08873 * 179.97438 * 14 13 12 16 16 C 1.54169 * 104.00939 * 359.97438 * 15 14 13 17 17 N 1.37146 * 122.82063 * 179.87148 * 13 12 11 18 18 H 0.96999 * 119.99595 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.47100 * 59.99991 * 9 7 2 20 20 H 1.09007 * 109.47255 * 300.00361 * 9 7 2 21 21 H 1.09001 * 109.47214 * 59.99778 * 10 9 7 22 22 H 1.09001 * 109.46855 * 299.99811 * 10 9 7 23 23 H 1.08995 * 109.46964 * 60.00073 * 11 10 9 24 24 H 1.09001 * 109.47015 * 299.99649 * 11 10 9 25 25 H 0.97002 * 120.00215 * 359.97438 * 12 11 10 26 26 H 1.09003 * 110.52391 * 241.36653 * 15 14 13 27 27 H 1.08997 * 110.52312 * 118.63013 * 15 14 13 28 28 H 1.09002 * 110.66065 * 118.44578 * 16 15 14 29 29 H 1.08998 * 110.66049 * 241.39455 * 16 15 14 30 30 H 0.97003 * 126.00893 * 0.02562 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9741 -7.3967 -0.0004 14 7 0.7161 -7.6964 -0.0004 15 6 0.5449 -9.1558 -0.0009 16 6 1.9870 -9.7008 -0.0020 17 7 2.8129 -8.4818 -0.0025 18 1 -0.4849 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8719 -3.6043 -0.8906 23 1 0.8540 -5.0445 -0.8914 24 1 0.8534 -5.0451 0.8886 25 1 3.3860 -5.9233 -0.0002 26 1 0.0144 -9.4781 -0.8969 27 1 0.0147 -9.4787 0.8950 28 1 2.1756 -10.2916 0.8945 29 1 2.1737 -10.2931 -0.8977 30 1 3.7825 -8.4530 -0.0038 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308188995.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:08 Heat of formation + Delta-G solvation = 1.072575 kcal Electronic energy + Delta-G solvation = -11915.310573 eV Core-core repulsion = 9744.467344 eV Total energy + Delta-G solvation = -2170.843229 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.79495 -37.39298 -35.32240 -33.12372 -32.38941 -29.76548 -27.82814 -24.82199 -23.38282 -22.00514 -20.86593 -19.00593 -18.46538 -16.82527 -16.53653 -16.22075 -16.05780 -15.30131 -14.47653 -14.10497 -14.06801 -13.68271 -13.21619 -12.99931 -12.90577 -12.51434 -12.50762 -12.34944 -11.56362 -11.44994 -11.17772 -10.53488 -10.52573 -9.64627 -8.71219 -8.17203 -6.28864 1.42742 1.46007 1.53836 1.89530 2.01266 2.43911 3.16260 3.18292 3.77563 4.25821 4.28539 4.32538 4.45444 4.62475 4.70144 4.76490 5.03147 5.10652 5.16367 5.20505 5.44186 5.53387 5.74654 5.86790 6.04693 6.22138 6.26117 6.88188 7.21917 7.40475 7.53666 8.94774 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.107831 B = 0.005370 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.602981 B = 5212.698462 C = 5435.803561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.102 4.102 11 C 0.164 3.836 12 N -0.717 5.717 13 C 0.591 3.409 14 N -0.689 5.689 15 C 0.037 3.963 16 C 0.094 3.906 17 N -0.763 5.763 18 H 0.263 0.737 19 H -0.008 1.008 20 H -0.008 1.008 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.414 0.586 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 -16.736 -0.007 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.140 4.140 11 C 0.039 3.961 12 N -0.359 5.359 13 C 0.226 3.774 14 N -0.435 5.435 15 C -0.094 4.094 16 C -0.031 4.031 17 N -0.413 5.413 18 H 0.072 0.928 19 H 0.011 0.989 20 H 0.011 0.989 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.251 0.749 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.770 -16.280 -0.007 17.632 hybrid contribution 1.277 0.508 0.001 1.374 sum 8.047 -15.772 -0.006 17.706 Atomic orbital electron populations 1.70114 1.07933 1.27838 1.51616 1.26016 0.95741 1.03502 0.94746 0.85470 0.78195 0.77949 0.79230 1.19054 1.21091 1.19065 1.21658 0.93694 0.92098 1.50613 0.91673 1.18922 0.94411 0.92850 0.95094 1.21595 0.98483 0.92210 1.01719 1.20964 0.90888 0.84035 1.00195 1.43645 1.09417 1.00524 1.82308 1.19814 0.87283 0.82472 0.87792 1.74502 1.12839 1.13790 1.42393 1.22874 0.96234 0.88268 1.02055 1.22556 0.90734 0.86585 1.03273 1.45838 1.08635 1.03622 1.83239 0.92807 0.98917 0.98926 0.91727 0.91736 0.93820 0.93829 0.74933 0.90698 0.90690 0.89382 0.89346 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -4.06 5.27 30.59 0.16 -3.90 16 11 C 0.16 6.02 5.82 86.38 0.50 6.52 16 12 N -0.72 -20.88 5.67 -350.46 -1.99 -22.87 16 13 C 0.59 17.30 8.63 261.14 2.25 19.55 16 14 N -0.69 -23.37 11.02 -347.47 -3.83 -27.20 16 15 C 0.04 0.89 8.04 86.69 0.70 1.59 16 16 C 0.09 1.61 8.10 86.63 0.70 2.31 16 17 N -0.76 -15.33 6.58 -346.87 -2.28 -17.62 16 18 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 19 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 20 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 21 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.41 9.55 8.59 -92.71 -0.80 8.75 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.42 5.95 8.96 -92.71 -0.83 5.11 16 Total: -1.00 -69.44 257.84 -1.12 -70.56 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -0.49 Total: 10.97 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 5.16 Total: -2.63 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -7.81 Total: -125.06 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.44 -1.12 -70.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308188995.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.629 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds