Wall clock time and date at job start Mon Mar 30 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47440 * 2 1 4 4 H 1.08996 * 115.56502 * 29.30885 * 3 2 1 5 5 C 1.53078 * 117.49243 * 243.60170 * 3 2 1 6 6 C 1.53002 * 59.98501 * 252.51429 * 5 3 2 7 7 H 1.09004 * 117.50055 * 107.50051 * 6 5 3 8 8 C 1.50707 * 117.49994 * 252.50225 * 6 5 3 9 9 O 1.21291 * 119.99778 * 68.74129 * 8 6 5 10 10 N 1.34777 * 119.99540 * 248.46872 * 8 6 5 11 11 C 1.46500 * 120.00507 * 0.27587 * 10 8 6 12 12 C 1.37103 * 119.99450 * 180.27279 * 10 8 6 13 13 H 1.07998 * 120.00158 * 21.60126 * 12 10 8 14 14 C 1.38950 * 119.99750 * 201.60081 * 12 10 8 15 15 N 1.31413 * 119.99880 * 15.84864 * 14 12 10 16 16 Si 1.86798 * 119.99952 * 195.84445 * 14 12 10 17 17 H 1.48498 * 109.46861 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46967 * 120.00075 * 16 14 12 19 19 H 1.48496 * 109.47291 * 239.99955 * 16 14 12 20 20 H 1.08998 * 109.47679 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46665 * 300.00605 * 1 2 3 22 22 H 1.08998 * 109.46754 * 59.99939 * 1 2 3 23 23 H 1.08998 * 109.47111 * 239.99604 * 2 1 3 24 24 H 1.08999 * 109.47143 * 120.00433 * 2 1 3 25 25 H 1.08997 * 117.51582 * 145.03913 * 5 3 2 26 26 H 1.08998 * 117.49512 * 359.97438 * 5 3 2 27 27 H 1.09000 * 109.47238 * 87.59151 * 11 10 8 28 28 H 1.08990 * 109.47053 * 207.59947 * 11 10 8 29 29 H 1.09001 * 109.46826 * 327.59516 * 11 10 8 30 30 H 0.97005 * 120.00044 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8448 1.9074 -1.2163 6 6 3.5502 1.6577 0.1182 7 1 4.1803 0.7717 0.1965 8 6 4.0230 2.8619 0.8914 9 8 3.2159 3.6158 1.3928 10 7 5.3426 3.0979 1.0304 11 6 6.3175 2.1873 0.4247 12 6 5.7728 4.1902 1.7385 13 1 5.1198 4.6564 2.4615 14 6 7.0488 4.6975 1.5260 15 7 7.7246 4.3483 0.4544 16 14 7.8035 5.8759 2.7634 17 1 6.8456 6.1073 3.8743 18 1 9.0562 5.2900 3.3044 19 1 8.1088 7.1665 2.0954 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8899 25 1 2.7228 2.9425 -1.5351 26 1 3.0109 1.1853 -2.0158 27 1 6.5172 2.4984 -0.6006 28 1 7.2435 2.2122 0.9990 29 1 5.9168 1.1736 0.4253 30 1 8.6155 4.7022 0.3061 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335651622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:28 Heat of formation + Delta-G solvation = -15.470933 kcal Electronic energy + Delta-G solvation = -12540.072500 eV Core-core repulsion = 10336.219140 eV Total energy + Delta-G solvation = -2203.853360 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.89907 -36.47346 -34.48165 -31.85542 -31.37742 -26.45588 -24.98421 -23.62114 -22.58161 -20.14231 -18.41687 -16.82843 -16.20609 -14.85108 -14.44819 -14.25810 -14.07046 -13.56176 -13.07434 -12.36259 -11.92142 -11.79225 -11.53111 -11.32681 -11.27298 -11.05355 -10.82220 -10.69720 -10.30319 -10.23055 -9.68103 -9.46499 -8.97142 -8.32604 -7.63283 -6.29802 -3.82152 3.16157 3.27231 3.34741 3.70808 4.14043 4.45825 4.75553 5.12306 5.25043 5.27212 5.36313 5.57542 5.61841 5.78449 5.90098 5.98333 6.07393 6.20041 6.28859 6.31610 6.44355 6.55893 6.78783 6.91926 7.24079 7.60317 8.18642 8.53935 9.23545 9.48557 10.06595 10.75221 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.075013 B = 0.008230 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.177355 B = 3401.315379 C = 3598.464142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.131 4.131 4 H 0.113 0.887 5 C -0.155 4.155 6 C -0.168 4.168 7 H 0.110 0.890 8 C 0.473 3.527 9 O -0.592 6.592 10 N -0.444 5.444 11 C 0.114 3.886 12 C -0.306 4.306 13 H 0.099 0.901 14 C 0.029 3.971 15 N -0.881 5.881 16 Si 0.924 3.076 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 H 0.050 0.950 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 -7.967 -2.563 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.150 4.150 4 H 0.131 0.869 5 C -0.193 4.193 6 C -0.189 4.189 7 H 0.128 0.872 8 C 0.261 3.739 9 O -0.478 6.478 10 N -0.162 5.162 11 C -0.030 4.030 12 C -0.434 4.434 13 H 0.117 0.883 14 C -0.174 4.174 15 N -0.520 5.520 16 Si 0.751 3.249 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.208 1.208 20 H 0.069 0.931 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.046 0.954 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.402 -7.546 -2.381 9.581 hybrid contribution 0.775 0.538 0.376 1.016 sum -4.627 -7.008 -2.006 8.633 Atomic orbital electron populations 1.21731 0.95721 1.00998 1.02020 1.21113 0.95741 0.94481 1.01607 1.22370 0.93192 0.97576 1.01828 0.86922 1.22975 1.03423 1.02353 0.90515 1.22305 0.95628 0.99981 1.00980 0.87230 1.19192 0.82926 0.86956 0.84792 1.90488 1.53662 1.50689 1.52925 1.43530 1.03543 1.22927 1.46154 1.21471 0.93024 0.89222 0.99258 1.19720 0.98986 1.07019 1.17696 0.88327 1.25322 0.97396 0.98089 0.96604 1.70042 1.12974 1.44837 1.24145 0.85892 0.78865 0.79589 0.80539 1.19220 1.20647 1.20775 0.93109 0.92604 0.92708 0.92116 0.91818 0.88806 0.88906 0.92933 0.91073 0.95438 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.87 37.16 0.37 -1.30 16 2 C -0.09 -1.21 6.21 -26.74 -0.17 -1.37 16 3 C -0.13 -2.22 5.25 -90.58 -0.48 -2.70 16 4 H 0.11 2.14 7.60 -51.93 -0.39 1.75 16 5 C -0.15 -2.63 9.88 -26.69 -0.26 -2.89 16 6 C -0.17 -3.30 5.01 -91.76 -0.46 -3.76 16 7 H 0.11 1.94 6.47 -51.93 -0.34 1.60 16 8 C 0.47 12.18 7.41 -10.98 -0.08 12.09 16 9 O -0.59 -17.23 15.94 5.55 0.09 -17.14 16 10 N -0.44 -11.91 3.02 -122.19 -0.37 -12.28 16 11 C 0.11 2.65 8.51 59.85 0.51 3.16 16 12 C -0.31 -8.85 9.28 -14.93 -0.14 -8.99 16 13 H 0.10 2.99 7.41 -52.49 -0.39 2.60 16 14 C 0.03 0.78 4.99 -17.47 -0.09 0.70 16 15 N -0.88 -24.08 10.84 55.50 0.60 -23.47 16 16 Si 0.92 21.14 29.58 -169.99 -5.03 16.11 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.72 7.88 -51.93 -0.41 0.31 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 26 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 27 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 28 H 0.07 1.72 6.81 -51.93 -0.35 1.37 16 29 H 0.03 0.53 6.09 -51.93 -0.32 0.21 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 254.23 15.07 3.83 3.83 Total: -1.00 -31.41 254.23 -5.94 -37.35 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.27 Total: 0.67 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.80 Total: -5.07 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.23 Total: -35.75 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.09 Total: -17.14 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.41 -5.94 -37.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335651622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.877 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds