Wall clock time and date at job start Mon Mar 30 2020 02:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47440 * 2 1 4 4 H 1.08996 * 115.56502 * 29.30885 * 3 2 1 5 5 C 1.53078 * 117.49243 * 243.60170 * 3 2 1 6 6 C 1.53002 * 59.98501 * 252.51429 * 5 3 2 7 7 H 1.09004 * 117.50055 * 107.50051 * 6 5 3 8 8 C 1.50707 * 117.49994 * 252.50225 * 6 5 3 9 9 O 1.21291 * 119.99778 * 68.74129 * 8 6 5 10 10 N 1.34777 * 119.99540 * 248.46872 * 8 6 5 11 11 C 1.46500 * 120.00507 * 0.27587 * 10 8 6 12 12 C 1.37103 * 119.99450 * 180.27279 * 10 8 6 13 13 H 1.07998 * 120.00158 * 21.60126 * 12 10 8 14 14 C 1.38950 * 119.99750 * 201.60081 * 12 10 8 15 15 N 1.31413 * 119.99880 * 15.84864 * 14 12 10 16 16 Si 1.86798 * 119.99952 * 195.84445 * 14 12 10 17 17 H 1.48498 * 109.46861 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46967 * 120.00075 * 16 14 12 19 19 H 1.48496 * 109.47291 * 239.99955 * 16 14 12 20 20 H 1.08998 * 109.47679 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46665 * 300.00605 * 1 2 3 22 22 H 1.08998 * 109.46754 * 59.99939 * 1 2 3 23 23 H 1.08998 * 109.47111 * 239.99604 * 2 1 3 24 24 H 1.08999 * 109.47143 * 120.00433 * 2 1 3 25 25 H 1.08997 * 117.51582 * 145.03913 * 5 3 2 26 26 H 1.08998 * 117.49512 * 359.97438 * 5 3 2 27 27 H 1.09000 * 109.47238 * 87.59151 * 11 10 8 28 28 H 1.08990 * 109.47053 * 207.59947 * 11 10 8 29 29 H 1.09001 * 109.46826 * 327.59516 * 11 10 8 30 30 H 0.97005 * 120.00044 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8448 1.9074 -1.2163 6 6 3.5502 1.6577 0.1182 7 1 4.1803 0.7717 0.1965 8 6 4.0230 2.8619 0.8914 9 8 3.2159 3.6158 1.3928 10 7 5.3426 3.0979 1.0304 11 6 6.3175 2.1873 0.4247 12 6 5.7728 4.1902 1.7385 13 1 5.1198 4.6564 2.4615 14 6 7.0488 4.6975 1.5260 15 7 7.7246 4.3483 0.4544 16 14 7.8035 5.8759 2.7634 17 1 6.8456 6.1073 3.8743 18 1 9.0562 5.2900 3.3044 19 1 8.1088 7.1665 2.0954 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8899 25 1 2.7228 2.9425 -1.5351 26 1 3.0109 1.1853 -2.0158 27 1 6.5172 2.4984 -0.6006 28 1 7.2435 2.2122 0.9990 29 1 5.9168 1.1736 0.4253 30 1 8.6155 4.7022 0.3061 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335651622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:27 Heat of formation + Delta-G solvation = -35.106599 kcal Electronic energy + Delta-G solvation = -12540.923966 eV Core-core repulsion = 10336.219140 eV Total energy + Delta-G solvation = -2204.704827 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71921 -38.06383 -36.53359 -33.69172 -32.74685 -28.44729 -26.88255 -24.82673 -24.25601 -21.42537 -20.21412 -18.91800 -18.05556 -16.76580 -16.10871 -15.98793 -15.41271 -15.13984 -14.75671 -13.86362 -13.54160 -13.22072 -13.18904 -13.11264 -12.92554 -12.65619 -12.40225 -12.14695 -12.05509 -11.85543 -11.13239 -11.02200 -10.77824 -10.35561 -9.71971 -8.38198 -6.00460 1.33225 1.38972 1.53727 1.88612 2.25563 2.84002 3.01689 3.18689 3.83135 3.91586 4.04520 4.26327 4.32347 4.52933 4.64874 4.70460 4.80613 4.96453 4.97414 5.11238 5.18448 5.30293 5.33441 5.34904 5.41948 5.55910 6.06828 6.46227 7.13712 7.44930 8.02681 8.65385 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.075013 B = 0.008230 C = 0.007779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.177355 B = 3401.315379 C = 3598.464142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.119 4.119 4 H 0.083 0.917 5 C -0.139 4.139 6 C -0.186 4.186 7 H 0.137 0.863 8 C 0.458 3.542 9 O -0.641 6.641 10 N -0.460 5.460 11 C 0.124 3.876 12 C -0.351 4.351 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.894 5.894 16 Si 0.991 3.009 17 H -0.275 1.275 18 H -0.262 1.262 19 H -0.274 1.274 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.085 0.915 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.043 0.957 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -9.552 -3.376 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.138 4.138 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.207 4.207 7 H 0.154 0.846 8 C 0.249 3.751 9 O -0.530 6.530 10 N -0.178 5.178 11 C -0.019 4.019 12 C -0.479 4.479 13 H 0.086 0.914 14 C -0.204 4.204 15 N -0.532 5.532 16 Si 0.814 3.186 17 H -0.200 1.200 18 H -0.186 1.186 19 H -0.199 1.199 20 H 0.093 0.907 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.004 -9.158 -3.221 10.921 hybrid contribution 0.636 1.059 0.599 1.374 sum -4.367 -8.098 -2.622 9.567 Atomic orbital electron populations 1.21731 0.94526 1.02436 1.01706 1.21146 0.96735 0.91454 1.02971 1.22463 0.90881 0.99591 1.00906 0.89896 1.23111 1.01516 1.02400 0.90622 1.22226 0.97866 0.98136 1.02471 0.84557 1.20268 0.82290 0.88285 0.84287 1.90438 1.54774 1.52964 1.54864 1.43828 1.04717 1.23037 1.46184 1.21435 0.91984 0.90615 0.97876 1.19661 0.99946 1.09128 1.19117 0.91366 1.26112 0.96867 0.99306 0.98136 1.70098 1.13337 1.45071 1.24735 0.84922 0.78150 0.77611 0.77882 1.19961 1.18635 1.19931 0.90750 0.93721 0.92370 0.89630 0.91483 0.90970 0.84658 0.93864 0.92584 0.91262 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.87 71.98 0.71 -2.22 16 2 C -0.09 -1.97 6.21 30.59 0.19 -1.78 16 3 C -0.12 -3.89 5.25 -10.77 -0.06 -3.95 16 4 H 0.08 3.21 7.60 -2.39 -0.02 3.19 16 5 C -0.14 -4.44 9.88 30.62 0.30 -4.13 16 6 C -0.19 -7.09 5.01 -11.53 -0.06 -7.15 16 7 H 0.14 4.40 6.47 -2.38 -0.02 4.39 16 8 C 0.46 24.16 7.41 87.66 0.65 24.81 16 9 O -0.64 -39.16 15.94 -3.06 -0.05 -39.21 16 10 N -0.46 -25.22 3.02 -658.89 -1.99 -27.21 16 11 C 0.12 5.68 8.51 127.77 1.09 6.76 16 12 C -0.35 -20.96 9.28 84.04 0.78 -20.18 16 13 H 0.07 4.38 7.41 -2.91 -0.02 4.36 16 14 C 0.00 -0.12 4.99 84.93 0.42 0.30 16 15 N -0.89 -48.65 10.84 21.66 0.23 -48.42 16 16 Si 0.99 43.48 29.58 68.60 2.03 45.51 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.59 7.88 -2.39 -0.02 1.57 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.14 3.18 8.03 -2.39 -0.02 3.16 16 27 H 0.04 2.03 7.79 -2.39 -0.02 2.01 16 28 H 0.06 2.70 6.81 -2.39 -0.02 2.68 16 29 H 0.07 2.53 6.09 -2.39 -0.01 2.52 16 30 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -70.44 254.23 5.37 -65.07 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.11 Total: 11.80 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 4.03 Total: -7.54 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.75 Total: -75.63 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.05 Total: -39.21 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.44 5.37 -65.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335651622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.963 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds