Wall clock time and date at job start Mon Mar 30 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 115.56709 * 2 1 4 4 C 1.53000 * 117.50008 * 214.31267 * 2 1 3 5 5 C 1.52997 * 60.00347 * 252.51154 * 4 2 1 6 6 H 1.08999 * 117.49685 * 252.51237 * 5 4 2 7 7 C 1.52998 * 117.51857 * 107.47572 * 5 4 2 8 8 C 1.50701 * 109.46514 * 116.37643 * 7 5 4 9 9 O 1.21284 * 120.00501 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99693 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00262 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.47492 * 180.02562 * 11 10 8 13 13 H 1.07999 * 119.99919 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00437 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00168 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46513 * 59.99956 * 16 14 12 18 18 H 1.48495 * 109.47202 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47020 * 300.00213 * 16 14 12 20 20 H 1.09002 * 109.47378 * 274.30750 * 1 2 3 21 21 H 1.09004 * 109.47432 * 34.31056 * 1 2 3 22 22 H 1.09003 * 109.47662 * 154.31050 * 1 2 3 23 23 H 1.09002 * 117.49696 * 0.02562 * 4 2 1 24 24 H 1.09002 * 117.50343 * 145.02258 * 4 2 1 25 25 H 1.09002 * 109.47419 * 236.36959 * 7 5 4 26 26 H 1.08996 * 109.47441 * 356.38017 * 7 5 4 27 27 H 0.97005 * 120.00556 * 359.97438 * 10 8 7 28 28 H 1.09006 * 109.46989 * 299.99938 * 11 10 8 29 29 H 1.09005 * 109.47076 * 59.99675 * 11 10 8 30 30 H 0.96993 * 120.00948 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1209 -0.7650 5 6 2.2364 -1.1211 0.7649 6 1 3.1715 -0.8753 1.2682 7 6 1.3587 -2.1559 1.4718 8 6 2.2300 -3.0966 2.2635 9 8 3.4344 -2.9538 2.2622 10 7 1.6709 -4.0968 2.9732 11 6 2.5178 -5.0117 3.7425 12 6 1.6534 -6.0309 4.4388 13 1 0.5804 -6.0001 4.3205 14 6 2.2324 -7.0029 5.2268 15 7 3.5391 -7.0402 5.3713 16 14 1.1608 -8.2659 6.0906 17 1 0.3903 -9.0349 5.0805 18 1 2.0194 -9.1933 6.8702 19 1 0.2209 -7.5732 7.0080 20 1 -0.3634 0.0772 1.0248 21 1 -0.3634 0.8489 -0.5793 22 1 -0.3634 -0.9261 -0.4455 23 1 1.6111 -1.8582 -1.2687 24 1 3.1715 -0.8752 -1.2683 25 1 0.6678 -1.6477 2.1445 26 1 0.7942 -2.7210 0.7301 27 1 0.7076 -4.2109 2.9746 28 1 3.2082 -5.5203 3.0694 29 1 3.0831 -4.4468 4.4838 30 1 3.9465 -7.7242 5.9254 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321650.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:43 Heat of formation + Delta-G solvation = -57.705079 kcal Electronic energy + Delta-G solvation = -12049.718837 eV Core-core repulsion = 9844.034067 eV Total energy + Delta-G solvation = -2205.684770 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68042 -38.59137 -36.11834 -34.35244 -31.22140 -29.34260 -28.46287 -24.75590 -22.52522 -21.58673 -20.22540 -18.99161 -17.68080 -17.02453 -16.61751 -16.24931 -15.69925 -14.73178 -14.52415 -14.32171 -14.00531 -13.71061 -13.36869 -12.95163 -12.83512 -12.66079 -12.38691 -12.24125 -12.06129 -11.51838 -10.85924 -10.80483 -10.76528 -10.55520 -9.82287 -8.29340 -6.46669 1.43143 1.47597 1.55875 1.79631 2.32485 2.57817 2.93961 3.05308 3.76806 3.87117 4.01599 4.11435 4.49075 4.56883 4.69764 4.78583 4.96407 5.03415 5.05951 5.13615 5.22824 5.27097 5.34967 5.48851 5.52459 5.70574 5.84617 6.64587 6.93004 7.23163 7.52193 8.82872 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.078669 B = 0.006217 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.837231 B = 4502.539099 C = 4756.483382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 H 0.109 0.891 4 C -0.177 4.177 5 C -0.161 4.161 6 H 0.084 0.916 7 C -0.091 4.091 8 C 0.492 3.508 9 O -0.606 6.606 10 N -0.709 5.709 11 C 0.264 3.736 12 C -0.558 4.558 13 H 0.085 0.915 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.987 3.013 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.261 1.261 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.409 0.591 28 H -0.015 1.015 29 H -0.015 1.015 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 10.417 -9.226 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 H 0.127 0.873 4 C -0.214 4.214 5 C -0.180 4.180 6 H 0.102 0.898 7 C -0.130 4.130 8 C 0.281 3.719 9 O -0.489 6.489 10 N -0.359 5.359 11 C 0.141 3.859 12 C -0.595 4.595 13 H 0.103 0.897 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.810 3.190 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.186 1.186 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.122 0.878 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.245 0.755 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.306 10.409 -9.133 16.684 hybrid contribution 0.084 -0.842 0.642 1.062 sum -9.222 9.567 -8.491 15.769 Atomic orbital electron populations 1.21417 0.91199 1.02876 1.02600 1.22517 0.96518 0.93878 1.02294 0.87270 1.23262 1.02854 1.02233 0.93079 1.22036 1.00839 1.00384 0.94746 0.89788 1.21166 0.97182 0.95036 0.99653 1.21610 0.89040 0.81791 0.79498 1.90614 1.18009 1.74250 1.66005 1.46231 1.11393 1.30126 1.48186 1.18535 0.90578 0.87537 0.89219 1.21606 0.94455 1.13289 1.30196 0.89688 1.26104 0.96495 1.00126 0.96946 1.70136 1.11798 1.35574 1.39619 0.85175 0.77914 0.77545 0.78382 1.18573 1.21098 1.18583 0.91547 0.90865 0.91847 0.87776 0.89081 0.86359 0.86655 0.75486 0.99712 0.99692 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.13 -2.60 6.41 -10.80 -0.07 -2.67 16 3 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 4 C -0.18 -3.95 9.82 30.59 0.30 -3.65 16 5 C -0.16 -4.38 5.41 -10.79 -0.06 -4.44 16 6 H 0.08 2.85 7.31 -2.39 -0.02 2.83 16 7 C -0.09 -2.45 5.06 29.85 0.15 -2.30 16 8 C 0.49 20.25 7.83 87.66 0.69 20.94 16 9 O -0.61 -31.30 15.56 -3.04 -0.05 -31.35 16 10 N -0.71 -30.61 5.55 -466.77 -2.59 -33.20 16 11 C 0.26 14.89 5.43 85.63 0.46 15.35 16 12 C -0.56 -30.73 9.28 25.60 0.24 -30.50 16 13 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 16 Si 0.99 42.46 29.54 68.60 2.03 44.48 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 20 H 0.07 0.92 7.83 -2.39 -0.02 0.90 16 21 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.06 0.86 7.90 -2.39 -0.02 0.84 16 23 H 0.10 2.06 7.94 -2.39 -0.02 2.04 16 24 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.12 2.56 7.77 -2.39 -0.02 2.54 16 26 H 0.12 2.50 7.88 -2.39 -0.02 2.48 16 27 H 0.41 14.30 8.32 -92.70 -0.77 13.53 16 28 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 29 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -72.01 260.71 2.86 -69.15 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.35 Total: 15.46 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 2.84 Total: -7.78 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -2.30 Total: -89.97 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.01 2.86 -69.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321650.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -72.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds