Wall clock time and date at job start Mon Mar 30 2020 02:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.56217 * 2 1 4 4 C 1.53080 * 117.49276 * 145.70214 * 2 1 3 5 5 C 1.53004 * 59.98366 * 107.48637 * 4 2 1 6 6 H 1.08995 * 117.50289 * 252.50109 * 5 4 2 7 7 C 1.53008 * 117.49615 * 107.49725 * 5 4 2 8 8 C 1.50700 * 109.46681 * 116.25918 * 7 5 4 9 9 O 1.21287 * 120.00118 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00000 * 180.02562 * 8 7 5 11 11 C 1.46491 * 120.00091 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46957 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 H 1.09003 * 109.47140 * 205.69455 * 1 2 3 21 21 H 1.08994 * 109.47337 * 325.69034 * 1 2 3 22 22 H 1.09000 * 109.46712 * 85.69832 * 1 2 3 23 23 H 1.08998 * 117.49310 * 0.02562 * 4 2 1 24 24 H 1.08996 * 117.51534 * 214.96111 * 4 2 1 25 25 H 1.08998 * 109.47034 * 356.26051 * 7 5 4 26 26 H 1.09002 * 109.46785 * 236.25381 * 7 5 4 27 27 H 0.97003 * 119.99349 * 359.97438 * 10 8 7 28 28 H 1.09004 * 109.47166 * 60.00164 * 11 10 8 29 29 H 1.08994 * 109.47507 * 299.99870 * 11 10 8 30 30 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2367 -1.1218 0.7652 5 6 2.2365 -1.1211 -0.7649 6 1 1.6112 -1.8584 -1.2684 7 6 3.5491 -0.7761 -1.4713 8 6 4.0228 -1.9687 -2.2614 9 8 3.3747 -2.9939 -2.2593 10 7 5.1673 -1.8965 -2.9696 11 6 5.6281 -3.0560 -3.7371 12 6 6.9209 -2.7161 -4.4331 13 1 7.3560 -1.7347 -4.3150 14 6 7.5516 -3.6602 -5.2155 15 7 7.0219 -4.8554 -5.3589 16 14 9.1579 -3.2414 -6.0719 17 1 10.1791 -2.8761 -5.0575 18 1 9.6276 -4.4183 -6.8461 19 1 8.9440 -2.0966 -6.9933 20 1 -0.3633 -0.9261 0.4456 21 1 -0.3634 0.8488 0.5792 22 1 -0.3633 0.0771 -1.0248 23 1 1.6112 -1.8595 1.2679 24 1 3.1719 -0.8766 1.2684 25 1 4.3018 -0.5094 -0.7294 26 1 3.3887 0.0657 -2.1450 27 1 5.6858 -1.0766 -2.9709 28 1 4.8756 -3.3228 -4.4793 29 1 5.7882 -3.8975 -3.0633 30 1 7.4654 -5.5194 -5.9097 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:45 Heat of formation + Delta-G solvation = -36.517968 kcal Electronic energy + Delta-G solvation = -11959.058983 eV Core-core repulsion = 9754.292955 eV Total energy + Delta-G solvation = -2204.766028 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.06749 -37.35002 -34.12515 -32.31400 -30.36999 -27.92888 -26.52292 -22.74419 -21.21334 -20.20492 -19.48332 -17.07560 -15.63753 -15.47554 -14.91429 -14.65999 -14.03589 -13.80218 -13.18335 -12.68911 -12.50798 -12.20160 -11.91810 -11.55159 -11.32719 -11.18270 -10.97209 -10.85094 -10.30514 -9.90656 -9.69256 -9.39261 -8.95605 -8.71423 -7.84373 -6.15128 -4.22130 3.26081 3.30761 3.32359 3.43377 3.79533 4.14677 4.38284 4.79473 4.92754 5.00937 5.20745 5.27850 5.41305 5.60126 5.73453 5.79935 5.82987 5.87474 5.97471 6.02252 6.25958 6.51415 7.33719 7.48236 7.54408 7.68916 7.99216 8.66940 8.80456 9.15567 9.44680 10.95124 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098124 B = 0.005804 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.285528 B = 4822.691763 C = 4957.814604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.175 4.175 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.112 4.112 8 C 0.499 3.501 9 O -0.556 6.556 10 N -0.715 5.715 11 C 0.249 3.751 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.390 0.610 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 10.338 8.623 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 H 0.119 0.881 4 C -0.212 4.212 5 C -0.147 4.147 6 H 0.136 0.864 7 C -0.152 4.152 8 C 0.284 3.716 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.128 3.872 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.222 0.778 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.448 9.387 8.507 14.696 hybrid contribution 1.244 0.520 -0.499 1.438 sum -6.204 9.907 8.008 14.170 Atomic orbital electron populations 1.21342 0.93052 1.01652 1.01788 1.22430 0.95165 0.94519 1.05734 0.88071 1.23191 1.02334 1.01050 0.94661 1.22176 0.97928 1.01097 0.93511 0.86439 1.21240 0.96660 0.97721 0.99617 1.20429 0.81646 0.89291 0.80259 1.90637 1.56243 1.32224 1.64491 1.46472 1.23210 1.18113 1.48544 1.19087 0.94365 0.83264 0.90478 1.21206 1.07064 0.99467 1.30486 0.91965 1.24958 0.98061 0.94739 0.96263 1.69971 1.39364 1.04283 1.38729 0.86470 0.82976 0.77901 0.79520 1.20075 1.21060 1.20068 0.92588 0.92482 0.92218 0.88963 0.89041 0.89465 0.89118 0.77753 0.95605 0.95608 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 37.16 0.38 -0.80 16 2 C -0.16 -1.77 6.13 -90.58 -0.56 -2.32 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.18 -2.11 9.83 -26.69 -0.26 -2.38 16 5 C -0.13 -1.81 5.13 -90.61 -0.46 -2.27 16 6 H 0.12 1.93 7.31 -51.93 -0.38 1.55 16 7 C -0.11 -1.62 5.98 -27.88 -0.17 -1.79 16 8 C 0.50 10.16 7.83 -10.98 -0.09 10.07 16 9 O -0.56 -13.71 15.56 5.55 0.09 -13.62 16 10 N -0.72 -15.36 5.55 -61.48 -0.34 -15.70 16 11 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 12 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 13 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 14 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 24 H 0.09 1.02 8.03 -51.93 -0.42 0.61 16 25 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.39 7.11 8.32 -40.82 -0.34 6.77 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -31.81 262.75 -6.62 -38.43 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.44 Total: 3.00 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.60 Total: -6.37 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.40 Total: -41.36 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.81 -6.62 -38.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds