Wall clock time and date at job start Mon Mar 30 2020 02:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.08999 * 117.49664 * 0.02562 * 5 2 1 7 7 C 1.52997 * 117.49924 * 215.02950 * 5 2 1 8 8 C 1.50706 * 109.47058 * 174.99700 * 7 5 2 9 9 O 1.21275 * 120.00039 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99787 * 179.97438 * 8 7 5 11 11 C 1.46494 * 119.99897 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47414 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99677 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00283 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00214 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00135 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47159 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47010 * 120.00064 * 16 14 12 19 19 H 1.48496 * 109.47312 * 240.00089 * 16 14 12 20 20 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 21 21 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 22 22 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 23 23 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 24 24 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 25 25 H 1.08997 * 109.46992 * 294.99355 * 7 5 2 26 26 H 1.08999 * 109.47047 * 54.99913 * 7 5 2 27 27 H 0.97002 * 119.99928 * 0.02562 * 10 8 7 28 28 H 1.08997 * 109.47609 * 300.00404 * 11 10 8 29 29 H 1.09005 * 109.47100 * 60.00114 * 11 10 8 30 30 H 0.97000 * 120.00328 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2685 7 6 3.5483 -0.7752 1.4727 8 6 4.0210 -1.9669 2.2649 9 8 3.3727 -2.9919 2.2634 10 7 5.1647 -1.8940 2.9741 11 6 5.6239 -3.0523 3.7446 12 6 6.9162 -2.7120 4.4412 13 1 7.3521 -1.7311 4.3215 14 6 7.5426 -3.6531 5.2303 15 7 7.0126 -4.8480 5.3748 16 14 9.1448 -3.2315 6.0932 17 1 9.5279 -1.8336 5.7704 18 1 8.9675 -3.3693 7.5612 19 1 10.2123 -4.1563 5.6346 20 1 -0.3633 0.0792 1.0246 21 1 -0.3634 0.8478 -0.5809 22 1 -0.3634 -0.9269 -0.4438 23 1 1.6112 -1.8584 -1.2685 24 1 3.1713 -0.8746 -1.2689 25 1 4.3019 -0.5098 0.7312 26 1 3.3875 0.0675 2.1451 27 1 5.6835 -1.0744 2.9749 28 1 4.8705 -3.3171 4.4864 29 1 5.7841 -3.8954 3.0725 30 1 7.4535 -5.5103 5.9298 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379321652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:47 Heat of formation + Delta-G solvation = -36.606506 kcal Electronic energy + Delta-G solvation = -11959.057357 eV Core-core repulsion = 9754.287489 eV Total energy + Delta-G solvation = -2204.769867 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.06905 -37.35232 -34.12773 -32.31668 -30.37078 -27.92912 -26.52654 -22.74909 -21.21315 -20.20518 -19.48372 -17.07808 -15.64489 -15.47646 -14.91580 -14.65896 -14.03452 -13.79752 -13.18401 -12.69035 -12.51085 -12.20163 -11.93528 -11.55383 -11.32830 -11.18134 -10.93041 -10.89019 -10.30914 -9.90945 -9.69045 -9.36298 -8.95738 -8.72565 -7.84520 -6.15650 -4.22495 3.24019 3.30987 3.34182 3.43375 3.79597 4.14632 4.38007 4.79430 4.92824 5.00742 5.20469 5.27854 5.41285 5.60134 5.73414 5.79890 5.82958 5.87426 5.97444 6.02213 6.25917 6.51395 7.33765 7.48268 7.54147 7.69031 7.98792 8.66976 8.80495 9.15550 9.44530 10.94701 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.098077 B = 0.005804 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.420485 B = 4822.985144 C = 4957.948626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.175 4.175 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.112 4.112 8 C 0.499 3.501 9 O -0.556 6.556 10 N -0.715 5.715 11 C 0.248 3.752 12 C -0.542 4.542 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.390 0.610 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 10.353 -8.659 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 H 0.119 0.881 4 C -0.212 4.212 5 C -0.147 4.147 6 H 0.136 0.864 7 C -0.152 4.152 8 C 0.284 3.716 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.127 3.873 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.524 5.524 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.223 0.777 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.444 9.413 -8.545 14.732 hybrid contribution 1.234 0.500 0.512 1.427 sum -6.210 9.913 -8.034 14.190 Atomic orbital electron populations 1.21344 0.93055 1.01651 1.01788 1.22417 0.95170 0.94536 1.05713 0.88077 1.23190 1.02339 1.01064 0.94643 1.22183 0.97942 1.01110 0.93490 0.86435 1.21237 0.96669 0.97728 0.99599 1.20426 0.81638 0.89277 0.80277 1.90634 1.56196 1.32213 1.64545 1.46472 1.23271 1.18176 1.48425 1.19099 0.94414 0.83309 0.90449 1.21279 1.07112 0.99657 1.30024 0.91857 1.24959 0.98057 0.94748 0.96297 1.69988 1.39335 1.04395 1.38633 0.86361 0.82786 0.78490 0.79270 1.19636 1.20793 1.20793 0.92218 0.92483 0.92588 0.88962 0.89042 0.89465 0.89117 0.77746 0.95597 0.95595 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 37.16 0.38 -0.80 16 2 C -0.16 -1.77 6.12 -90.62 -0.56 -2.32 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.18 -2.11 9.83 -26.70 -0.26 -2.38 16 5 C -0.13 -1.81 5.14 -90.58 -0.47 -2.28 16 6 H 0.12 1.93 7.31 -51.93 -0.38 1.55 16 7 C -0.11 -1.62 5.98 -27.88 -0.17 -1.78 16 8 C 0.50 10.16 7.83 -10.98 -0.09 10.07 16 9 O -0.56 -13.70 15.56 5.56 0.09 -13.62 16 10 N -0.72 -15.35 5.55 -61.47 -0.34 -15.69 16 11 C 0.25 6.71 5.43 -5.20 -0.03 6.68 16 12 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 13 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 23 H 0.09 1.07 8.05 -51.92 -0.42 0.65 16 24 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 25 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -31.85 262.75 -6.62 -38.47 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.44 Total: 2.94 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -1.60 Total: -6.37 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.40 Total: -41.34 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.85 -6.62 -38.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.866 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds